Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PRELID1P1-202ENST00000567272 903 ntBASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 PP12613-201ENST00000424958 2230 ntBASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 AL645608.8-201ENST00000606034 2086 ntBASIC18.14■□□□□ 0.5
SHROOM3Q8TF72 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
SHROOM3Q8TF72 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 AL353801.3-201ENST00000609898 542 ntBASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 LINC00896-202ENST00000609602 2128 ntBASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.14■□□□□ 0.49
SHROOM3Q8TF72 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 AC090616.6-201ENST00000582640 721 ntBASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 BNIP3P18-201ENST00000593976 575 ntBASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 AC120114.3-201ENST00000611923 658 ntBASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 KRT18P1-202ENST00000452408 1331 ntBASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 NSUN5P1-202ENST00000421140 1535 ntBASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 NSUN5P2-203ENST00000457352 1529 ntBASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 AC079781.3-201ENST00000449110 356 ntBASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHROOM3Q8TF72 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 UNC93B7-201ENST00000509439 705 ntBASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 Z69720.1-201ENST00000601483 472 ntBASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SHROOM3Q8TF72 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 AP002414.4-201ENST00000589764 1148 ntBASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 AC116407.2-201ENST00000613639 860 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms