Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USP38Q8NB14 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.88■□□□□ 0.77
USP38Q8NB14 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.88■□□□□ 0.77
USP38Q8NB14 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.88■□□□□ 0.77
USP38Q8NB14 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 SCARNA2-201ENST00000458748 420 ntBASIC19.88■□□□□ 0.77
USP38Q8NB14 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.88■□□□□ 0.77
USP38Q8NB14 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.88■□□□□ 0.77
USP38Q8NB14 AL356488.2-201ENST00000602755 427 ntBASIC19.88■□□□□ 0.77
USP38Q8NB14 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.88■□□□□ 0.77
USP38Q8NB14 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
USP38Q8NB14 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.88■□□□□ 0.77
USP38Q8NB14 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.88■□□□□ 0.77
USP38Q8NB14 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.88■□□□□ 0.77
USP38Q8NB14 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
USP38Q8NB14 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USP38Q8NB14 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.87■□□□□ 0.77
USP38Q8NB14 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.87■□□□□ 0.77
USP38Q8NB14 AP000997.3-201ENST00000623333 2250 ntBASIC19.87■□□□□ 0.77
USP38Q8NB14 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
USP38Q8NB14 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
USP38Q8NB14 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.87■□□□□ 0.77
USP38Q8NB14 AC126763.1-201ENST00000552015 2118 ntBASIC19.87■□□□□ 0.77
USP38Q8NB14 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
USP38Q8NB14 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
USP38Q8NB14 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
USP38Q8NB14 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 HTR5BP-201ENST00000430851 1154 ntBASIC19.87■□□□□ 0.77
USP38Q8NB14 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.87■□□□□ 0.77
USP38Q8NB14 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.87■□□□□ 0.77
USP38Q8NB14 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
USP38Q8NB14 AC112482.1-201ENST00000492080 688 ntBASIC19.87■□□□□ 0.77
USP38Q8NB14 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.87■□□□□ 0.77
USP38Q8NB14 AC009533.2-201ENST00000543664 586 ntBASIC19.87■□□□□ 0.77
USP38Q8NB14 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.87■□□□□ 0.77
USP38Q8NB14 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 FAM215A-202ENST00000632077 792 ntBASIC19.87■□□□□ 0.77
USP38Q8NB14 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
USP38Q8NB14 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.87■□□□□ 0.77
USP38Q8NB14 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
USP38Q8NB14 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP38Q8NB14 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.86■□□□□ 0.77
USP38Q8NB14 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
USP38Q8NB14 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.86■□□□□ 0.77
USP38Q8NB14 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.86■□□□□ 0.77
USP38Q8NB14 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 AC116407.3-201ENST00000623905 1129 ntBASIC19.86■□□□□ 0.77
USP38Q8NB14 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 AC134684.3-201ENST00000641758 218 ntBASIC19.86■□□□□ 0.77
USP38Q8NB14 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
USP38Q8NB14 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.86■□□□□ 0.77
USP38Q8NB14 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.86■□□□□ 0.77
USP38Q8NB14 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP38Q8NB14 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.86■□□□□ 0.77
USP38Q8NB14 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP38Q8NB14 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
USP38Q8NB14 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms