Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
LINC00643Q86TS7 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 KRT16P2-201ENST00000414673 1423 ntBASIC11.1□□□□□ -0.63
LINC00643Q86TS7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 HLA-G-202ENST00000376815 851 ntBASIC11.1□□□□□ -0.63
LINC00643Q86TS7 HLA-G-203ENST00000376818 1127 ntBASIC11.1□□□□□ -0.63
LINC00643Q86TS7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 AC100803.2-201ENST00000562459 1963 ntBASIC11.1□□□□□ -0.63
LINC00643Q86TS7 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
LINC00643Q86TS7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 STK40-201ENST00000359297 4837 ntTSL 2 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
LINC00643Q86TS7 AC007322.3-201ENST00000426526 701 ntBASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms