Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 PDPK2P-202ENST00000562415 1191 ntBASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 AL805961.1-202ENST00000641562 540 ntBASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LYSMD4Q5XG99 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LYSMD4Q5XG99 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LYSMD4Q5XG99 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 IGLL3P-201ENST00000412472 434 ntBASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 AC092364.2-202ENST00000597012 1073 ntBASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LYSMD4Q5XG99 AC116562.4-201ENST00000641316 2276 ntBASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 BCL2-203ENST00000589955 5011 ntBASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 HCG11-201ENST00000411553 5696 ntBASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 AC011467.4-201ENST00000594891 528 ntBASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 AC004877.2-201ENST00000623941 599 ntBASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 AC010507.1-201ENST00000633895 436 ntBASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 BCAR1-209ENST00000546196 1340 ntBASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.38■□□□□ 0.37
LYSMD4Q5XG99 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 MIR770-201ENST00000390219 98 ntBASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 FAM8A3P-201ENST00000427218 844 ntBASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 AC126763.1-201ENST00000552015 2118 ntBASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 AC096734.2-201ENST00000562054 433 ntBASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
LYSMD4Q5XG99 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms