Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 MIR6752-201ENST00000618442 71 ntBASIC18.72■□□□□ 0.59
CHD9Q3L8U1 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CHD9Q3L8U1 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.71■□□□□ 0.59
CHD9Q3L8U1 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 AP001059.3-201ENST00000619053 235 ntBASIC18.71■□□□□ 0.59
CHD9Q3L8U1 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 OR8S1-201ENST00000310194 1080 ntBASIC18.71■□□□□ 0.59
CHD9Q3L8U1 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 SPDYE22P-201ENST00000582158 798 ntBASIC18.71■□□□□ 0.59
CHD9Q3L8U1 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 MIR943-201ENST00000401286 94 ntBASIC18.71■□□□□ 0.59
CHD9Q3L8U1 TFAMP1-201ENST00000412727 736 ntBASIC18.71■□□□□ 0.59
CHD9Q3L8U1 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 FAM185BP-201ENST00000443595 716 ntBASIC18.71■□□□□ 0.59
CHD9Q3L8U1 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHD9Q3L8U1 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CHD9Q3L8U1 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHD9Q3L8U1 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 PTCHD3P3-201ENST00000403073 906 ntBASIC18.69■□□□□ 0.58
CHD9Q3L8U1 TIMM8BP1-201ENST00000452384 211 ntBASIC18.69■□□□□ 0.58
CHD9Q3L8U1 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 GPS2P2-201ENST00000430745 888 ntBASIC18.69■□□□□ 0.58
CHD9Q3L8U1 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 AL353135.1-201ENST00000606729 504 ntBASIC18.69■□□□□ 0.58
CHD9Q3L8U1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 AC006116.8-202ENST00000587620 1550 ntBASIC18.69■□□□□ 0.58
CHD9Q3L8U1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHD9Q3L8U1 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHD9Q3L8U1 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms