Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AL138781.2-201ENST00000617896 1843 ntBASIC17.12■□□□□ 0.33
COL28A1Q2UY09 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.11■□□□□ 0.33
COL28A1Q2UY09 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 AL109659.2-201ENST00000606809 1674 ntBASIC17.1■□□□□ 0.33
COL28A1Q2UY09 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 AC008556.1-201ENST00000610908 2040 ntBASIC17.1■□□□□ 0.33
COL28A1Q2UY09 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 UNC93B6-202ENST00000528242 690 ntBASIC17.1■□□□□ 0.33
COL28A1Q2UY09 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 AC005829.1-201ENST00000570002 483 ntBASIC17.1■□□□□ 0.33
COL28A1Q2UY09 AP002472.1-201ENST00000577490 586 ntBASIC17.1■□□□□ 0.33
COL28A1Q2UY09 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL28A1Q2UY09 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 CROCCP3-202ENST00000420820 1947 ntBASIC17.09■□□□□ 0.33
COL28A1Q2UY09 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 AC005336.2-201ENST00000593183 939 ntBASIC17.09■□□□□ 0.33
COL28A1Q2UY09 MIR1199-201ENST00000621445 119 ntBASIC17.09■□□□□ 0.33
COL28A1Q2UY09 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 HOXB1-202ENST00000577092 1414 ntBASIC17.09■□□□□ 0.33
COL28A1Q2UY09 MTMR9LP-203ENST00000426597 1545 ntBASIC17.09■□□□□ 0.33
COL28A1Q2UY09 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms