Protein–RNA interactions for Protein: Q2I0M5

RSPO4, R-spondin-4, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO4Q2I0M5 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 AC068137.2-201ENST00000605408 478 ntBASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 IRX1P1-201ENST00000438849 1838 ntBASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 NCF1C-201ENST00000438382 1427 ntBASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RSPO4Q2I0M5 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 TIMM8BP1-201ENST00000452384 211 ntBASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 TUBB3P1-201ENST00000405796 1332 ntBASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
RSPO4Q2I0M5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 ARSEP1-201ENST00000420443 635 ntBASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 SLC25A39P2-201ENST00000537614 270 ntBASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 AL596325.1-201ENST00000563991 1082 ntBASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 AC025048.6-201ENST00000634326 1161 ntBASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RSPO4Q2I0M5 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 AL020989.1-201ENST00000422979 469 ntBASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 AC005237.2-201ENST00000434368 219 ntBASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
RSPO4Q2I0M5 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms