Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 AC079781.3-201ENST00000449110 356 ntBASIC19.26■□□□□ 0.67
TNFSF9P41273 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.26■□□□□ 0.67
TNFSF9P41273 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFSF9P41273 AF238378.1-201ENST00000526806 358 ntBASIC19.26■□□□□ 0.67
TNFSF9P41273 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TNFSF9P41273 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.26■□□□□ 0.67
TNFSF9P41273 AP001269.4-201ENST00000609611 512 ntBASIC19.26■□□□□ 0.67
TNFSF9P41273 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFSF9P41273 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFSF9P41273 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFSF9P41273 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TNFSF9P41273 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFSF9P41273 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFSF9P41273 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFSF9P41273 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.26■□□□□ 0.67
TNFSF9P41273 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TNFSF9P41273 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.26■□□□□ 0.67
TNFSF9P41273 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.25■□□□□ 0.67
TNFSF9P41273 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.25■□□□□ 0.67
TNFSF9P41273 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 COX5BP2-201ENST00000392354 334 ntBASIC19.25■□□□□ 0.67
TNFSF9P41273 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.25■□□□□ 0.67
TNFSF9P41273 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.25■□□□□ 0.67
TNFSF9P41273 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.25■□□□□ 0.67
TNFSF9P41273 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
TNFSF9P41273 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.25■□□□□ 0.67
TNFSF9P41273 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.25■□□□□ 0.67
TNFSF9P41273 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.25■□□□□ 0.67
TNFSF9P41273 LINC01711-201ENST00000598340 967 ntBASIC19.25■□□□□ 0.67
TNFSF9P41273 AC116407.2-201ENST00000613639 860 ntBASIC19.25■□□□□ 0.67
TNFSF9P41273 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
TNFSF9P41273 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.25■□□□□ 0.67
TNFSF9P41273 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.25■□□□□ 0.67
TNFSF9P41273 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TNFSF9P41273 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.25■□□□□ 0.67
TNFSF9P41273 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
TNFSF9P41273 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TNFSF9P41273 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.25■□□□□ 0.67
TNFSF9P41273 AC008764.6-201ENST00000595909 2069 ntBASIC19.24■□□□□ 0.67
TNFSF9P41273 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFSF9P41273 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFSF9P41273 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TNFSF9P41273 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFSF9P41273 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 AC004870.1-201ENST00000315132 882 ntBASIC19.24■□□□□ 0.67
TNFSF9P41273 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TNFSF9P41273 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 DDX43P3-201ENST00000441064 443 ntBASIC19.24■□□□□ 0.67
TNFSF9P41273 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFSF9P41273 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFSF9P41273 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.24■□□□□ 0.67
TNFSF9P41273 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFSF9P41273 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFSF9P41273 AL031008.1-201ENST00000619963 541 ntBASIC19.24■□□□□ 0.67
TNFSF9P41273 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFSF9P41273 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFSF9P41273 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFSF9P41273 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFSF9P41273 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFSF9P41273 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFSF9P41273 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.23■□□□□ 0.67
TNFSF9P41273 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
TNFSF9P41273 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TNFSF9P41273 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFSF9P41273 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
TNFSF9P41273 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFSF9P41273 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TNFSF9P41273 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFSF9P41273 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TNFSF9P41273 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.23■□□□□ 0.67
TNFSF9P41273 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFSF9P41273 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TNFSF9P41273 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.23■□□□□ 0.67
TNFSF9P41273 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms