Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD3P31249 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC13.79□□□□□ -0.2
HOXD3P31249 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
HOXD3P31249 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
HOXD3P31249 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HOXD3P31249 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
HOXD3P31249 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXD3P31249 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HOXD3P31249 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 AC112698.1-201ENST00000510299 916 ntBASIC13.78□□□□□ -0.2
HOXD3P31249 AP001005.1-201ENST00000571755 1248 ntBASIC13.78□□□□□ -0.2
HOXD3P31249 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.78□□□□□ -0.2
HOXD3P31249 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.78□□□□□ -0.2
HOXD3P31249 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HOXD3P31249 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 AC022898.2-201ENST00000616822 1312 ntBASIC13.78□□□□□ -0.2
HOXD3P31249 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HOXD3P31249 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD3P31249 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD3P31249 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC13.77□□□□□ -0.2
HOXD3P31249 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD3P31249 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD3P31249 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD3P31249 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
HOXD3P31249 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD3P31249 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD3P31249 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HOXD3P31249 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD3P31249 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
HOXD3P31249 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD3P31249 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD3P31249 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD3P31249 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HOXD3P31249 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXD3P31249 FAM197Y8-203ENST00000450145 560 ntBASIC13.77□□□□□ -0.21
HOXD3P31249 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HOXD3P31249 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC13.77□□□□□ -0.21
HOXD3P31249 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.77□□□□□ -0.21
HOXD3P31249 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXD3P31249 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms