Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A3P12111 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A3P12111 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A3P12111 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A3P12111 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A3P12111 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A3P12111 AC099778.1-201ENST00000568593 1911 ntBASIC18.39■□□□□ 0.53
COL6A3P12111 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A3P12111 AC140912.1-201ENST00000577171 1054 ntBASIC18.39■□□□□ 0.53
COL6A3P12111 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A3P12111 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL6A3P12111 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A3P12111 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
COL6A3P12111 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
COL6A3P12111 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 KRT18P65-201ENST00000439811 1286 ntBASIC18.39■□□□□ 0.53
COL6A3P12111 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A3P12111 AC026150.2-201ENST00000564693 1156 ntBASIC18.39■□□□□ 0.53
COL6A3P12111 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A3P12111 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A3P12111 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A3P12111 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A3P12111 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A3P12111 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A3P12111 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A3P12111 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL6A3P12111 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A3P12111 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 AC241585.1-201ENST00000433527 519 ntBASIC18.38■□□□□ 0.53
COL6A3P12111 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.38■□□□□ 0.53
COL6A3P12111 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL6A3P12111 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL6A3P12111 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
COL6A3P12111 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL6A3P12111 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
COL6A3P12111 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
COL6A3P12111 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A3P12111 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A3P12111 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.38■□□□□ 0.53
COL6A3P12111 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
COL6A3P12111 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A3P12111 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL6A3P12111 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.37■□□□□ 0.53
COL6A3P12111 FAM86C2P-203ENST00000528684 1004 ntBASIC18.37■□□□□ 0.53
COL6A3P12111 AL583810.1-201ENST00000553344 1045 ntBASIC18.37■□□□□ 0.53
COL6A3P12111 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
COL6A3P12111 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.37■□□□□ 0.53
COL6A3P12111 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
COL6A3P12111 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A3P12111 AC002056.1-201ENST00000395613 760 ntBASIC18.37■□□□□ 0.53
COL6A3P12111 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.37■□□□□ 0.53
COL6A3P12111 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
COL6A3P12111 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 LINC01225-203ENST00000563550 1244 ntBASIC18.37■□□□□ 0.53
COL6A3P12111 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 AC009102.3-201ENST00000623118 1491 ntBASIC18.37■□□□□ 0.53
COL6A3P12111 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A3P12111 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 AL020989.1-201ENST00000422979 469 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms