Protein–RNA interactions for Protein: P07384

CAPN1, Calpain-1 catalytic subunit, humanhuman

Predictions only

Length 714 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1P07384 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
CAPN1P07384 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CAPN1P07384 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.57■□□□□ 0.4
CAPN1P07384 ATP5G2P1-201ENST00000433580 426 ntBASIC17.57■□□□□ 0.4
CAPN1P07384 HLA-F-220ENST00000434407 884 ntBASIC17.57■□□□□ 0.4
CAPN1P07384 KRT18P48-201ENST00000434763 852 ntBASIC17.57■□□□□ 0.4
CAPN1P07384 HCG4P8-203ENST00000443049 980 ntBASIC17.57■□□□□ 0.4
CAPN1P07384 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.57■□□□□ 0.4
CAPN1P07384 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CAPN1P07384 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.57■□□□□ 0.4
CAPN1P07384 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.57■□□□□ 0.4
CAPN1P07384 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.57■□□□□ 0.4
CAPN1P07384 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CAPN1P07384 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.57■□□□□ 0.4
CAPN1P07384 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.57■□□□□ 0.4
CAPN1P07384 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CAPN1P07384 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CAPN1P07384 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 KRT18P55-202ENST00000578578 1546 ntBASIC17.57■□□□□ 0.4
CAPN1P07384 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CAPN1P07384 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CAPN1P07384 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CAPN1P07384 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CAPN1P07384 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.56■□□□□ 0.4
CAPN1P07384 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.56■□□□□ 0.4
CAPN1P07384 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CAPN1P07384 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.56■□□□□ 0.4
CAPN1P07384 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 DUSP5P1-201ENST00000441325 1139 ntBASIC17.56■□□□□ 0.4
CAPN1P07384 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.56■□□□□ 0.4
CAPN1P07384 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CAPN1P07384 NPAP1P7-201ENST00000613027 823 ntBASIC17.56■□□□□ 0.4
CAPN1P07384 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.56■□□□□ 0.4
CAPN1P07384 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.56■□□□□ 0.4
CAPN1P07384 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CAPN1P07384 AC006116.8-202ENST00000587620 1550 ntBASIC17.56■□□□□ 0.4
CAPN1P07384 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CAPN1P07384 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CAPN1P07384 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.55■□□□□ 0.4
CAPN1P07384 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.55■□□□□ 0.4
CAPN1P07384 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.55■□□□□ 0.4
CAPN1P07384 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CAPN1P07384 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.55■□□□□ 0.4
CAPN1P07384 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.55■□□□□ 0.4
CAPN1P07384 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 KRT126P-201ENST00000549467 1181 ntBASIC17.55■□□□□ 0.4
CAPN1P07384 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.55■□□□□ 0.4
CAPN1P07384 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CAPN1P07384 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CAPN1P07384 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CAPN1P07384 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CAPN1P07384 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CAPN1P07384 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CAPN1P07384 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CAPN1P07384 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CAPN1P07384 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CAPN1P07384 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CAPN1P07384 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CAPN1P07384 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CAPN1P07384 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CAPN1P07384 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CAPN1P07384 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms