Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.26■□□□□ 0.35
LDLRP01130 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
LDLRP01130 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LDLRP01130 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LDLRP01130 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.25■□□□□ 0.35
LDLRP01130 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LDLRP01130 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 ATP5G2P1-201ENST00000433580 426 ntBASIC17.25■□□□□ 0.35
LDLRP01130 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.25■□□□□ 0.35
LDLRP01130 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.25■□□□□ 0.35
LDLRP01130 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.25■□□□□ 0.35
LDLRP01130 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
LDLRP01130 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.25■□□□□ 0.35
LDLRP01130 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LDLRP01130 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.25■□□□□ 0.35
LDLRP01130 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LDLRP01130 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.25■□□□□ 0.35
LDLRP01130 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LDLRP01130 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.25■□□□□ 0.35
LDLRP01130 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDLRP01130 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.24■□□□□ 0.35
LDLRP01130 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 KRT8P3-201ENST00000519669 1449 ntBASIC17.24■□□□□ 0.35
LDLRP01130 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.24■□□□□ 0.35
LDLRP01130 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.24■□□□□ 0.35
LDLRP01130 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.24■□□□□ 0.35
LDLRP01130 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.24■□□□□ 0.35
LDLRP01130 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
LDLRP01130 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.24■□□□□ 0.35
LDLRP01130 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LDLRP01130 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 OR6D1P-203ENST00000641209 4860 ntBASIC17.24■□□□□ 0.35
LDLRP01130 AL096828.2-201ENST00000567259 1965 ntBASIC17.24■□□□□ 0.35
LDLRP01130 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LDLRP01130 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LDLRP01130 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDLRP01130 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
LDLRP01130 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.23■□□□□ 0.35
LDLRP01130 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.23■□□□□ 0.35
LDLRP01130 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 PP12613-201ENST00000424958 2230 ntBASIC17.23■□□□□ 0.35
LDLRP01130 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDLRP01130 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LDLRP01130 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LDLRP01130 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.23■□□□□ 0.35
LDLRP01130 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.23■□□□□ 0.35
LDLRP01130 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms