Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
MSH5O43196 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC24.34■■□□□ 1.49
MSH5O43196 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC24.34■■□□□ 1.49
MSH5O43196 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH5O43196 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH5O43196 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH5O43196 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 TSPY19P-201ENST00000418461 509 ntBASIC24.33■■□□□ 1.49
MSH5O43196 AC007041.1-201ENST00000438989 1155 ntBASIC24.33■■□□□ 1.49
MSH5O43196 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC24.33■■□□□ 1.49
MSH5O43196 TSPY18P-201ENST00000441642 509 ntBASIC24.33■■□□□ 1.49
MSH5O43196 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 MTND1P5-201ENST00000517906 940 ntBASIC24.33■■□□□ 1.49
MSH5O43196 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC24.33■■□□□ 1.49
MSH5O43196 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
MSH5O43196 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC24.33■■□□□ 1.49
MSH5O43196 AC024243.1-201ENST00000609234 778 ntBASIC24.33■■□□□ 1.49
MSH5O43196 AL121772.3-201ENST00000610840 674 ntBASIC24.33■■□□□ 1.49
MSH5O43196 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
MSH5O43196 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH5O43196 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC24.33■■□□□ 1.49
MSH5O43196 PXK-206ENST00000463280 2825 ntTSL 2 BASIC24.33■■□□□ 1.48
MSH5O43196 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
MSH5O43196 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC24.32■■□□□ 1.48
MSH5O43196 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC24.32■■□□□ 1.48
MSH5O43196 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC24.32■■□□□ 1.48
MSH5O43196 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC24.32■■□□□ 1.48
MSH5O43196 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC24.32■■□□□ 1.48
MSH5O43196 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 AL050305.1-201ENST00000399993 1230 ntBASIC24.32■■□□□ 1.48
MSH5O43196 HMGN1P6-201ENST00000438508 291 ntBASIC24.32■■□□□ 1.48
MSH5O43196 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC24.32■■□□□ 1.48
MSH5O43196 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
MSH5O43196 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC24.32■■□□□ 1.48
MSH5O43196 FOSL1P1-201ENST00000511041 816 ntBASIC24.32■■□□□ 1.48
MSH5O43196 KCTD14-202ENST00000533144 904 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 KRT8P26-201ENST00000534154 1276 ntBASIC24.32■■□□□ 1.48
MSH5O43196 AP002807.1-203ENST00000534517 664 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH5O43196 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC24.32■■□□□ 1.48
MSH5O43196 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC24.32■■□□□ 1.48
MSH5O43196 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH5O43196 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH5O43196 EFTUD1P1-204ENST00000560401 1798 ntBASIC24.31■■□□□ 1.48
MSH5O43196 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC24.31■■□□□ 1.48
MSH5O43196 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH5O43196 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC24.31■■□□□ 1.48
MSH5O43196 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH5O43196 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC24.31■■□□□ 1.48
MSH5O43196 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH5O43196 MTND1P1-201ENST00000445453 368 ntBASIC24.31■■□□□ 1.48
MSH5O43196 URGCP-206ENST00000446958 365 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH5O43196 LINC00265-3P-201ENST00000447588 903 ntBASIC24.31■■□□□ 1.48
MSH5O43196 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 AC015818.2-201ENST00000563569 840 ntBASIC24.31■■□□□ 1.48
MSH5O43196 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH5O43196 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
MSH5O43196 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH5O43196 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC24.31■■□□□ 1.48
MSH5O43196 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 TBC1D3P2-202ENST00000577902 1649 ntBASIC24.31■■□□□ 1.48
MSH5O43196 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
MSH5O43196 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC24.31■■□□□ 1.48
MSH5O43196 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC24.31■■□□□ 1.48
MSH5O43196 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH5O43196 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms