Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 AF238378.1-201ENST00000526806 358 ntBASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPIPA3F8WFD2 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 PHGDH-209ENST00000641074 1780 ntBASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 MTCL1P1-201ENST00000446207 792 ntBASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 AC009154.2-201ENST00000621177 724 ntBASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NPIPA3F8WFD2 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 MRPL3P1-201ENST00000400109 1033 ntBASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 AL662844.1-201ENST00000546340 181 ntBASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 SLC25A6P4-201ENST00000586535 553 ntBASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 AC005336.2-201ENST00000593183 939 ntBASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 AC114341.1-201ENST00000618070 349 ntBASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NPIPA3F8WFD2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms