Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC163A0A0D9SF12 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC163A0A0D9SF12 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC163A0A0D9SF12 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
CCDC163A0A0D9SF12 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 ESPNP-201ENST00000270691 2015 ntBASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 BCAR1-209ENST00000546196 1340 ntBASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 AC004835.2-201ENST00000603762 682 ntBASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC163A0A0D9SF12 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 SIRPAP1-201ENST00000448467 1770 ntBASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 AL035633.1-201ENST00000406139 838 ntBASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 AL513210.1-201ENST00000629608 234 ntBASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 AC018445.3-201ENST00000624177 1945 ntBASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC163A0A0D9SF12 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 FAM58CP-201ENST00000435741 640 ntBASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 AC023141.13-201ENST00000604991 943 ntBASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC163A0A0D9SF12 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms