Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 AC010331.1-201ENST00000611423 582 ntBASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 AL592071.1-201ENST00000611956 408 ntBASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP4E1Q9UPM8 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 RN7SL606P-201ENST00000472779 293 ntBASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 AC090616.6-201ENST00000582640 721 ntBASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 AL445228.2-201ENST00000605589 952 ntBASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 AC124864.1-201ENST00000623408 392 ntBASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP4E1Q9UPM8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 LINC00896-202ENST00000609602 2128 ntBASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP4E1Q9UPM8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 MIR1224-201ENST00000408193 85 ntBASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 DDX43P3-201ENST00000441064 443 ntBASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 BX276092.5-203ENST00000456199 560 ntBASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 IER3-202ENST00000376377 1350 ntBASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP4E1Q9UPM8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms