Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AP000867.4-201ENST00000641616 219 ntBASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 AC097374.2-201ENST00000618617 1306 ntBASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 SNHG9-202ENST00000564014 471 ntBASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
LIMD1Q9UGP4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 MYLKP1-201ENST00000509077 1580 ntBASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 KRT18P2-201ENST00000447938 1258 ntBASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 MIR1199-201ENST00000621445 119 ntBASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 AC005593.1-201ENST00000624894 515 ntBASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMD1Q9UGP4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 KRT18P65-201ENST00000439811 1286 ntBASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 AC112698.1-201ENST00000510299 916 ntBASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMD1Q9UGP4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms