Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 KRT18P65-201ENST00000439811 1286 ntBASIC18.39■□□□□ 0.53
USP29Q9HBJ7 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP29Q9HBJ7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 TPM4P1-201ENST00000436100 807 ntBASIC18.38■□□□□ 0.53
USP29Q9HBJ7 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 CLEC4GP1-201ENST00000596555 870 ntBASIC18.38■□□□□ 0.53
USP29Q9HBJ7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.38■□□□□ 0.53
USP29Q9HBJ7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 AC141586.5-201ENST00000624546 2050 ntBASIC18.37■□□□□ 0.53
USP29Q9HBJ7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 HBZP1-201ENST00000354915 429 ntBASIC18.37■□□□□ 0.53
USP29Q9HBJ7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 AC108860.2-201ENST00000562760 2183 ntBASIC18.37■□□□□ 0.53
USP29Q9HBJ7 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.37■□□□□ 0.53
USP29Q9HBJ7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 AC133963.1-201ENST00000504166 1679 ntBASIC18.36■□□□□ 0.53
USP29Q9HBJ7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 AC012313.1-201ENST00000593393 3059 ntBASIC18.36■□□□□ 0.53
USP29Q9HBJ7 KRT8P47-201ENST00000604727 1398 ntBASIC18.36■□□□□ 0.53
USP29Q9HBJ7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
USP29Q9HBJ7 AC004263.2-201ENST00000617183 678 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms