Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VRK1Q99986 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.79■□□□□ 0.12
VRK1Q99986 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.79■□□□□ 0.12
VRK1Q99986 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.79■□□□□ 0.12
VRK1Q99986 AC104390.1-201ENST00000555663 520 ntBASIC15.79■□□□□ 0.12
VRK1Q99986 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.79■□□□□ 0.12
VRK1Q99986 AL136038.4-201ENST00000603606 1261 ntBASIC15.79■□□□□ 0.12
VRK1Q99986 AC010240.3-201ENST00000607688 395 ntBASIC15.79■□□□□ 0.12
VRK1Q99986 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.79■□□□□ 0.12
VRK1Q99986 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VRK1Q99986 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 AC073592.3-201ENST00000625118 1834 ntBASIC15.79■□□□□ 0.12
VRK1Q99986 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VRK1Q99986 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.79■□□□□ 0.12
VRK1Q99986 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VRK1Q99986 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
VRK1Q99986 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VRK1Q99986 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VRK1Q99986 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.78■□□□□ 0.12
VRK1Q99986 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VRK1Q99986 HOXB1-202ENST00000577092 1414 ntBASIC15.78■□□□□ 0.12
VRK1Q99986 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.78■□□□□ 0.12
VRK1Q99986 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.78■□□□□ 0.12
VRK1Q99986 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.78■□□□□ 0.12
VRK1Q99986 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.78■□□□□ 0.12
VRK1Q99986 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 SPDYE13P-201ENST00000445314 798 ntBASIC15.78■□□□□ 0.12
VRK1Q99986 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
VRK1Q99986 AC126763.1-201ENST00000552015 2118 ntBASIC15.78■□□□□ 0.12
VRK1Q99986 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.78■□□□□ 0.12
VRK1Q99986 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.78■□□□□ 0.12
VRK1Q99986 AC083906.6-201ENST00000641366 219 ntBASIC15.78■□□□□ 0.12
VRK1Q99986 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
VRK1Q99986 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VRK1Q99986 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VRK1Q99986 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.78■□□□□ 0.12
VRK1Q99986 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
VRK1Q99986 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.77■□□□□ 0.12
VRK1Q99986 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
VRK1Q99986 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.77■□□□□ 0.12
VRK1Q99986 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 AL391807.1-203ENST00000604392 2365 ntBASIC15.77■□□□□ 0.12
VRK1Q99986 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.77■□□□□ 0.12
VRK1Q99986 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VRK1Q99986 BX276092.5-203ENST00000456199 560 ntBASIC15.77■□□□□ 0.12
VRK1Q99986 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.77■□□□□ 0.12
VRK1Q99986 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.77■□□□□ 0.12
VRK1Q99986 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC15.77■□□□□ 0.12
VRK1Q99986 AC079602.3-201ENST00000623931 403 ntBASIC15.77■□□□□ 0.12
VRK1Q99986 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
VRK1Q99986 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.77■□□□□ 0.11
VRK1Q99986 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VRK1Q99986 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.77■□□□□ 0.11
VRK1Q99986 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VRK1Q99986 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.77■□□□□ 0.11
VRK1Q99986 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VRK1Q99986 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VRK1Q99986 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VRK1Q99986 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VRK1Q99986 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms