Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13AQ96RL7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC096734.2-201ENST00000562054 433 ntBASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC008687.5-201ENST00000593746 558 ntBASIC17.5■□□□□ 0.39
VPS13AQ96RL7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AL512356.2-201ENST00000546955 174 ntBASIC17.5■□□□□ 0.39
VPS13AQ96RL7 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AL805961.1-202ENST00000641562 540 ntBASIC17.5■□□□□ 0.39
VPS13AQ96RL7 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC096633.1-201ENST00000422446 749 ntBASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13AQ96RL7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 HILS1-202ENST00000545329 423 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 GNAS-203ENST00000306120 1878 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 ATP5G2P4-201ENST00000442175 420 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 CNN2P2-201ENST00000443536 909 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 CNN2P3-201ENST00000450201 906 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 LINC02560-201ENST00000596379 459 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 AC068137.2-201ENST00000605408 478 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 AL136317.3-201ENST00000618497 906 ntBASIC17.49■□□□□ 0.39
VPS13AQ96RL7 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13AQ96RL7 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13AQ96RL7 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms