Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC21.01■□□□□ 0.95
BRF1Q92994 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.01■□□□□ 0.95
BRF1Q92994 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.01■□□□□ 0.95
BRF1Q92994 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.01■□□□□ 0.95
BRF1Q92994 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.01■□□□□ 0.95
BRF1Q92994 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
BRF1Q92994 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
BRF1Q92994 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.01■□□□□ 0.95
BRF1Q92994 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21■□□□□ 0.95
BRF1Q92994 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
BRF1Q92994 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21■□□□□ 0.95
BRF1Q92994 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21■□□□□ 0.95
BRF1Q92994 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21■□□□□ 0.95
BRF1Q92994 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21■□□□□ 0.95
BRF1Q92994 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21■□□□□ 0.95
BRF1Q92994 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21■□□□□ 0.95
BRF1Q92994 AC011498.5-201ENST00000592027 486 ntBASIC21■□□□□ 0.95
BRF1Q92994 AL121956.5-201ENST00000625261 221 ntBASIC21■□□□□ 0.95
BRF1Q92994 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
BRF1Q92994 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21■□□□□ 0.95
BRF1Q92994 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
BRF1Q92994 PP12613-201ENST00000424958 2230 ntBASIC21■□□□□ 0.95
BRF1Q92994 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21■□□□□ 0.95
BRF1Q92994 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.99■□□□□ 0.95
BRF1Q92994 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.99■□□□□ 0.95
BRF1Q92994 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.99■□□□□ 0.95
BRF1Q92994 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.99■□□□□ 0.95
BRF1Q92994 FAM86EP-206ENST00000510506 987 ntBASIC20.99■□□□□ 0.95
BRF1Q92994 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.99■□□□□ 0.95
BRF1Q92994 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
BRF1Q92994 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
BRF1Q92994 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
BRF1Q92994 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.99■□□□□ 0.95
BRF1Q92994 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 AC116407.2-201ENST00000613639 860 ntBASIC20.99■□□□□ 0.95
BRF1Q92994 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.99■□□□□ 0.95
BRF1Q92994 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.99■□□□□ 0.95
BRF1Q92994 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
BRF1Q92994 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.99■□□□□ 0.95
BRF1Q92994 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.99■□□□□ 0.95
BRF1Q92994 AC005332.1-201ENST00000577698 1310 ntBASIC20.99■□□□□ 0.95
BRF1Q92994 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BRF1Q92994 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
BRF1Q92994 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.98■□□□□ 0.95
BRF1Q92994 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
BRF1Q92994 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.98■□□□□ 0.95
BRF1Q92994 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.98■□□□□ 0.95
BRF1Q92994 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.98■□□□□ 0.95
BRF1Q92994 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.98■□□□□ 0.95
BRF1Q92994 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.98■□□□□ 0.95
BRF1Q92994 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.98■□□□□ 0.95
BRF1Q92994 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.98■□□□□ 0.95
BRF1Q92994 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
BRF1Q92994 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
BRF1Q92994 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
BRF1Q92994 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
BRF1Q92994 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 REXO1L11P-201ENST00000620964 1927 ntBASIC20.98■□□□□ 0.95
BRF1Q92994 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
BRF1Q92994 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BRF1Q92994 AC090340.1-201ENST00000620778 4980 ntBASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms