Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 AC012317.2-201ENST00000623305 2251 ntBASIC15.98■□□□□ 0.15
CLRN1P58418 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 PCDHB18P-201ENST00000524813 2368 ntBASIC15.98■□□□□ 0.15
CLRN1P58418 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 TSPY12P-201ENST00000421279 868 ntBASIC15.98■□□□□ 0.15
CLRN1P58418 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 KRT18P65-201ENST00000439811 1286 ntBASIC15.98■□□□□ 0.15
CLRN1P58418 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 DUX4L26-201ENST00000489078 1255 ntBASIC15.98■□□□□ 0.15
CLRN1P58418 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.98■□□□□ 0.15
CLRN1P58418 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC15.98■□□□□ 0.15
CLRN1P58418 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.98■□□□□ 0.15
CLRN1P58418 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.98■□□□□ 0.15
CLRN1P58418 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC15.98■□□□□ 0.15
CLRN1P58418 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.98■□□□□ 0.15
CLRN1P58418 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.98■□□□□ 0.15
CLRN1P58418 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CLRN1P58418 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLRN1P58418 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CLRN1P58418 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.98■□□□□ 0.15
CLRN1P58418 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.98■□□□□ 0.15
CLRN1P58418 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.97■□□□□ 0.15
CLRN1P58418 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.97■□□□□ 0.15
CLRN1P58418 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CLRN1P58418 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
CLRN1P58418 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CLRN1P58418 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CLRN1P58418 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.97■□□□□ 0.15
CLRN1P58418 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.97■□□□□ 0.15
CLRN1P58418 KRT18P21-201ENST00000515767 1272 ntBASIC15.97■□□□□ 0.15
CLRN1P58418 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.97■□□□□ 0.15
CLRN1P58418 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.97■□□□□ 0.15
CLRN1P58418 AC116407.2-201ENST00000613639 860 ntBASIC15.97■□□□□ 0.15
CLRN1P58418 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
CLRN1P58418 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
CLRN1P58418 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CLRN1P58418 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CLRN1P58418 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLRN1P58418 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.96■□□□□ 0.15
CLRN1P58418 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.96■□□□□ 0.15
CLRN1P58418 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CLRN1P58418 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.96■□□□□ 0.15
CLRN1P58418 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.96■□□□□ 0.15
CLRN1P58418 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CLRN1P58418 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC15.96■□□□□ 0.15
CLRN1P58418 MIR662-201ENST00000384847 95 ntBASIC15.96■□□□□ 0.15
CLRN1P58418 IGHGP-201ENST00000390555 1178 ntBASIC15.96■□□□□ 0.15
CLRN1P58418 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLRN1P58418 DDT-203ENST00000403754 569 ntTSL 3 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms