Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL6A3P12111 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL6A3P12111 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A3P12111 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A3P12111 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
COL6A3P12111 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.43■□□□□ 0.54
COL6A3P12111 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL6A3P12111 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.43■□□□□ 0.54
COL6A3P12111 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A3P12111 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A3P12111 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A3P12111 SIRPAP1-201ENST00000448467 1770 ntBASIC18.43■□□□□ 0.54
COL6A3P12111 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL6A3P12111 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A3P12111 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.42■□□□□ 0.54
COL6A3P12111 RN7SL589P-201ENST00000481268 310 ntBASIC18.42■□□□□ 0.54
COL6A3P12111 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.42■□□□□ 0.54
COL6A3P12111 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.42■□□□□ 0.54
COL6A3P12111 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 AL049757.1-201ENST00000616842 1596 ntBASIC18.42■□□□□ 0.54
COL6A3P12111 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.42■□□□□ 0.54
COL6A3P12111 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
COL6A3P12111 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.42■□□□□ 0.54
COL6A3P12111 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 AC007375.3-201ENST00000600936 2314 ntBASIC18.42■□□□□ 0.54
COL6A3P12111 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 RBPMS2P1-201ENST00000437762 623 ntBASIC18.42■□□□□ 0.54
COL6A3P12111 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 RN7SL752P-201ENST00000463779 287 ntBASIC18.42■□□□□ 0.54
COL6A3P12111 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.42■□□□□ 0.54
COL6A3P12111 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL6A3P12111 AC026120.1-201ENST00000611536 926 ntBASIC18.42■□□□□ 0.54
COL6A3P12111 AL499627.1-201ENST00000569373 2188 ntBASIC18.42■□□□□ 0.54
COL6A3P12111 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.42■□□□□ 0.54
COL6A3P12111 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.42■□□□□ 0.54
COL6A3P12111 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 API5-211ENST00000534695 560 ntTSL 5 BASIC18.42■□□□□ 0.54
COL6A3P12111 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A3P12111 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.42■□□□□ 0.54
COL6A3P12111 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A3P12111 FEM1AP3-201ENST00000403722 1741 ntBASIC18.41■□□□□ 0.54
COL6A3P12111 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
COL6A3P12111 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
COL6A3P12111 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 AC079140.1-201ENST00000508039 487 ntBASIC18.41■□□□□ 0.54
COL6A3P12111 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.41■□□□□ 0.54
COL6A3P12111 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A3P12111 AC007064.4-201ENST00000637740 555 ntBASIC18.41■□□□□ 0.54
COL6A3P12111 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A3P12111 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
COL6A3P12111 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
COL6A3P12111 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A3P12111 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
COL6A3P12111 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.41■□□□□ 0.54
COL6A3P12111 AC244093.1-201ENST00000610837 814 ntBASIC18.41■□□□□ 0.54
COL6A3P12111 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
COL6A3P12111 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A3P12111 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.41■□□□□ 0.54
COL6A3P12111 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A3P12111 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.4■□□□□ 0.54
COL6A3P12111 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
COL6A3P12111 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.4■□□□□ 0.54
COL6A3P12111 MIR6869-201ENST00000619434 62 ntBASIC18.4■□□□□ 0.54
COL6A3P12111 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A3P12111 COG4-212ENST00000564653 590 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A3P12111 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A3P12111 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A3P12111 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms