Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A2P12110 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A2P12110 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A2P12110 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
COL6A2P12110 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.65■□□□□ 0.42
COL6A2P12110 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 AL121761.2-201ENST00000598007 1648 ntBASIC17.65■□□□□ 0.42
COL6A2P12110 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL6A2P12110 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 REXO1L11P-201ENST00000620964 1927 ntBASIC17.65■□□□□ 0.42
COL6A2P12110 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL6A2P12110 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.65■□□□□ 0.42
COL6A2P12110 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A2P12110 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A2P12110 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
COL6A2P12110 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A2P12110 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL6A2P12110 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
COL6A2P12110 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A2P12110 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A2P12110 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A2P12110 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A2P12110 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A2P12110 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A2P12110 TSPY15P-201ENST00000457163 923 ntBASIC17.64■□□□□ 0.41
COL6A2P12110 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A2P12110 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A2P12110 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A2P12110 AC080080.1-201ENST00000625121 2420 ntBASIC17.64■□□□□ 0.41
COL6A2P12110 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
COL6A2P12110 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A2P12110 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A2P12110 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
COL6A2P12110 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL6A2P12110 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.63■□□□□ 0.41
COL6A2P12110 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL6A2P12110 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A2P12110 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A2P12110 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.63■□□□□ 0.41
COL6A2P12110 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A2P12110 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL6A2P12110 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A2P12110 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A2P12110 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A2P12110 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.62■□□□□ 0.41
COL6A2P12110 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A2P12110 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms