Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCNAP12004 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.42■□□□□ 0.38
PCNAP12004 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.41■□□□□ 0.38
PCNAP12004 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PCNAP12004 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PCNAP12004 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 AK4P3-201ENST00000418260 669 ntBASIC17.41■□□□□ 0.38
PCNAP12004 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.41■□□□□ 0.38
PCNAP12004 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.41■□□□□ 0.38
PCNAP12004 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.41■□□□□ 0.38
PCNAP12004 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PCNAP12004 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 AC079602.3-201ENST00000623931 403 ntBASIC17.41■□□□□ 0.38
PCNAP12004 AL391807.1-203ENST00000604392 2365 ntBASIC17.41■□□□□ 0.38
PCNAP12004 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
PCNAP12004 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PCNAP12004 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCNAP12004 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.41■□□□□ 0.38
PCNAP12004 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PCNAP12004 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
PCNAP12004 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.4■□□□□ 0.38
PCNAP12004 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.4■□□□□ 0.38
PCNAP12004 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.4■□□□□ 0.38
PCNAP12004 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
PCNAP12004 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PCNAP12004 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.4■□□□□ 0.38
PCNAP12004 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 RNF152P1-201ENST00000397754 604 ntBASIC17.4■□□□□ 0.38
PCNAP12004 STARP1-201ENST00000397973 869 ntBASIC17.4■□□□□ 0.38
PCNAP12004 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.4■□□□□ 0.38
PCNAP12004 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 AL359075.1-203ENST00000462729 1002 ntBASIC17.4■□□□□ 0.38
PCNAP12004 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.4■□□□□ 0.38
PCNAP12004 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.4■□□□□ 0.38
PCNAP12004 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.4■□□□□ 0.38
PCNAP12004 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.4■□□□□ 0.38
PCNAP12004 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.4■□□□□ 0.38
PCNAP12004 AC024563.2-201ENST00000603282 481 ntBASIC17.4■□□□□ 0.38
PCNAP12004 AC006011.2-201ENST00000621313 1158 ntBASIC17.4■□□□□ 0.38
PCNAP12004 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.4■□□□□ 0.38
PCNAP12004 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.4■□□□□ 0.38
PCNAP12004 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.4■□□□□ 0.38
PCNAP12004 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 LINC00602-201ENST00000629776 2065 ntBASIC17.4■□□□□ 0.38
PCNAP12004 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCNAP12004 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
PCNAP12004 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
PCNAP12004 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
PCNAP12004 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCNAP12004 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCNAP12004 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCNAP12004 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
PCNAP12004 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.39■□□□□ 0.37
PCNAP12004 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 TSPY5P-201ENST00000426936 936 ntBASIC17.39■□□□□ 0.37
PCNAP12004 AC092647.4-201ENST00000457211 535 ntBASIC17.39■□□□□ 0.37
PCNAP12004 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.39■□□□□ 0.37
PCNAP12004 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
PCNAP12004 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.39■□□□□ 0.37
PCNAP12004 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.39■□□□□ 0.37
PCNAP12004 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms