Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.97■□□□□ 0.47
VIMP08670 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.97■□□□□ 0.47
VIMP08670 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VIMP08670 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
VIMP08670 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 SLC29A4P1-201ENST00000398760 971 ntBASIC17.96■□□□□ 0.47
VIMP08670 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.96■□□□□ 0.47
VIMP08670 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.96■□□□□ 0.47
VIMP08670 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.96■□□□□ 0.47
VIMP08670 AC006970.2-201ENST00000450065 779 ntBASIC17.96■□□□□ 0.47
VIMP08670 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.96■□□□□ 0.47
VIMP08670 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.96■□□□□ 0.47
VIMP08670 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.96■□□□□ 0.47
VIMP08670 AC073111.5-205ENST00000641717 521 ntBASIC17.96■□□□□ 0.47
VIMP08670 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
VIMP08670 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
VIMP08670 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VIMP08670 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VIMP08670 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.95■□□□□ 0.46
VIMP08670 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VIMP08670 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.95■□□□□ 0.46
VIMP08670 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.95■□□□□ 0.46
VIMP08670 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.95■□□□□ 0.46
VIMP08670 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.95■□□□□ 0.46
VIMP08670 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.95■□□□□ 0.46
VIMP08670 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
VIMP08670 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VIMP08670 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.95■□□□□ 0.46
VIMP08670 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VIMP08670 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
VIMP08670 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
VIMP08670 AC009102.3-201ENST00000623118 1491 ntBASIC17.95■□□□□ 0.46
VIMP08670 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.94■□□□□ 0.46
VIMP08670 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.94■□□□□ 0.46
VIMP08670 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
VIMP08670 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 MIR663A-201ENST00000385250 93 ntBASIC17.94■□□□□ 0.46
VIMP08670 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.94■□□□□ 0.46
VIMP08670 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.94■□□□□ 0.46
VIMP08670 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.94■□□□□ 0.46
VIMP08670 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.94■□□□□ 0.46
VIMP08670 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.94■□□□□ 0.46
VIMP08670 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VIMP08670 LINC02199-201ENST00000506655 2702 ntBASIC17.94■□□□□ 0.46
VIMP08670 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.94■□□□□ 0.46
VIMP08670 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.94■□□□□ 0.46
VIMP08670 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
VIMP08670 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.94■□□□□ 0.46
VIMP08670 AC034236.2-201ENST00000606662 1610 ntBASIC17.94■□□□□ 0.46
VIMP08670 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VIMP08670 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VIMP08670 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.93■□□□□ 0.46
VIMP08670 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms