Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
RB1P06400 AL031432.2-201ENST00000566714 459 ntBASIC18.79■□□□□ 0.6
RB1P06400 AL928711.1-201ENST00000570165 459 ntBASIC18.79■□□□□ 0.6
RB1P06400 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
RB1P06400 GGTLC5P-201ENST00000617623 998 ntBASIC18.79■□□□□ 0.6
RB1P06400 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.79■□□□□ 0.6
RB1P06400 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RB1P06400 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RB1P06400 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
RB1P06400 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RB1P06400 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RB1P06400 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RB1P06400 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
RB1P06400 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RB1P06400 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 SIRPAP1-201ENST00000448467 1770 ntBASIC18.78■□□□□ 0.6
RB1P06400 AC093010.1-201ENST00000473625 1624 ntBASIC18.78■□□□□ 0.6
RB1P06400 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
RB1P06400 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 AC005332.7-201ENST00000614046 2005 ntBASIC18.78■□□□□ 0.6
RB1P06400 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RB1P06400 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
RB1P06400 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
RB1P06400 IGLL3P-201ENST00000412472 434 ntBASIC18.78■□□□□ 0.6
RB1P06400 AP000344.2-201ENST00000512987 629 ntBASIC18.78■□□□□ 0.6
RB1P06400 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.78■□□□□ 0.6
RB1P06400 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.78■□□□□ 0.6
RB1P06400 AC004877.2-201ENST00000623941 599 ntBASIC18.78■□□□□ 0.6
RB1P06400 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.78■□□□□ 0.6
RB1P06400 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.78■□□□□ 0.6
RB1P06400 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RB1P06400 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RB1P06400 AC148477.5-201ENST00000625164 1645 ntBASIC18.78■□□□□ 0.6
RB1P06400 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 AC005082.1-201ENST00000413042 2259 ntBASIC18.77■□□□□ 0.6
RB1P06400 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 ANO7L1-203ENST00000602586 1720 ntBASIC18.77■□□□□ 0.6
RB1P06400 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.77■□□□□ 0.6
RB1P06400 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.77■□□□□ 0.6
RB1P06400 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.77■□□□□ 0.6
RB1P06400 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.77■□□□□ 0.6
RB1P06400 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.77■□□□□ 0.6
RB1P06400 RHOQP3-201ENST00000437982 621 ntBASIC18.77■□□□□ 0.6
RB1P06400 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.77■□□□□ 0.6
RB1P06400 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.77■□□□□ 0.6
RB1P06400 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.77■□□□□ 0.6
RB1P06400 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 AC106028.4-201ENST00000614509 607 ntBASIC18.77■□□□□ 0.6
RB1P06400 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.77■□□□□ 0.6
RB1P06400 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
RB1P06400 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.77■□□□□ 0.6
RB1P06400 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.77■□□□□ 0.6
RB1P06400 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RB1P06400 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RB1P06400 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
RB1P06400 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RB1P06400 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
RB1P06400 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.76■□□□□ 0.59
RB1P06400 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.76■□□□□ 0.59
RB1P06400 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.76■□□□□ 0.59
RB1P06400 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms