Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
APOEP02649 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
APOEP02649 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
APOEP02649 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.58
APOEP02649 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.71■□□□□ 0.58
APOEP02649 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
APOEP02649 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
APOEP02649 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
APOEP02649 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.7■□□□□ 0.58
APOEP02649 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.7■□□□□ 0.58
APOEP02649 TOB2P1-201ENST00000469761 992 ntBASIC18.7■□□□□ 0.58
APOEP02649 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
APOEP02649 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.7■□□□□ 0.58
APOEP02649 TPSP2-201ENST00000561760 610 ntBASIC18.7■□□□□ 0.58
APOEP02649 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.7■□□□□ 0.58
APOEP02649 AC011840.4-201ENST00000578471 627 ntBASIC18.7■□□□□ 0.58
APOEP02649 MIR3180-1-201ENST00000580374 94 ntBASIC18.7■□□□□ 0.58
APOEP02649 MIR3180-3-201ENST00000584616 94 ntBASIC18.7■□□□□ 0.58
APOEP02649 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
APOEP02649 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.7■□□□□ 0.58
APOEP02649 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.7■□□□□ 0.58
APOEP02649 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.7■□□□□ 0.58
APOEP02649 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
APOEP02649 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
APOEP02649 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOEP02649 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.7■□□□□ 0.58
APOEP02649 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
APOEP02649 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
APOEP02649 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.69■□□□□ 0.58
APOEP02649 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.69■□□□□ 0.58
APOEP02649 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
APOEP02649 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
APOEP02649 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.69■□□□□ 0.58
APOEP02649 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
APOEP02649 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
APOEP02649 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.69■□□□□ 0.58
APOEP02649 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.69■□□□□ 0.58
APOEP02649 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.69■□□□□ 0.58
APOEP02649 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
APOEP02649 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.69■□□□□ 0.58
APOEP02649 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.69■□□□□ 0.58
APOEP02649 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.69■□□□□ 0.58
APOEP02649 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.69■□□□□ 0.58
APOEP02649 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.69■□□□□ 0.58
APOEP02649 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
APOEP02649 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.69■□□□□ 0.58
APOEP02649 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
APOEP02649 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
APOEP02649 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.68■□□□□ 0.58
APOEP02649 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.68■□□□□ 0.58
APOEP02649 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
APOEP02649 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
APOEP02649 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
APOEP02649 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.68■□□□□ 0.58
APOEP02649 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 AC138028.4-201ENST00000564984 1845 ntBASIC18.68■□□□□ 0.58
APOEP02649 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.68■□□□□ 0.58
APOEP02649 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
APOEP02649 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.68■□□□□ 0.58
APOEP02649 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.68■□□□□ 0.58
APOEP02649 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.68■□□□□ 0.58
APOEP02649 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
APOEP02649 Z69720.1-201ENST00000601483 472 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms