Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 MCCD1P2-201ENST00000423228 335 ntBASIC21.68■■□□□ 1.06
COL4A1P02462 S100A2-206ENST00000497140 697 ntTSL 2 BASIC21.68■■□□□ 1.06
COL4A1P02462 YBX1P5-201ENST00000509441 847 ntBASIC21.68■■□□□ 1.06
COL4A1P02462 MIR4751-201ENST00000578027 74 ntBASIC21.68■■□□□ 1.06
COL4A1P02462 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC21.68■■□□□ 1.06
COL4A1P02462 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 AC005593.1-201ENST00000624894 515 ntBASIC21.68■■□□□ 1.06
COL4A1P02462 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 AL805961.1-202ENST00000641562 540 ntBASIC21.68■■□□□ 1.06
COL4A1P02462 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A1P02462 AC009336.1-201ENST00000608941 1553 ntBASIC21.68■■□□□ 1.06
COL4A1P02462 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A1P02462 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A1P02462 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A1P02462 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.67■■□□□ 1.06
COL4A1P02462 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 AC003669.1-201ENST00000334569 611 ntBASIC21.67■■□□□ 1.06
COL4A1P02462 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC21.67■■□□□ 1.06
COL4A1P02462 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.67■■□□□ 1.06
COL4A1P02462 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC21.67■■□□□ 1.06
COL4A1P02462 AL078644.1-201ENST00000609881 752 ntBASIC21.67■■□□□ 1.06
COL4A1P02462 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.67■■□□□ 1.06
COL4A1P02462 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
COL4A1P02462 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.67■■□□□ 1.06
COL4A1P02462 AC002310.6-201ENST00000624451 1377 ntBASIC21.67■■□□□ 1.06
COL4A1P02462 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.67■■□□□ 1.06
COL4A1P02462 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
COL4A1P02462 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A1P02462 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A1P02462 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL4A1P02462 COA5-202ENST00000409997 557 ntTSL 4 BASIC21.66■■□□□ 1.06
COL4A1P02462 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL4A1P02462 DNAJB3-201ENST00000446806 729 ntBASIC21.66■■□□□ 1.06
COL4A1P02462 IGHV3-65-201ENST00000523210 341 ntBASIC21.66■■□□□ 1.06
COL4A1P02462 AC027796.2-201ENST00000575326 344 ntBASIC21.66■■□□□ 1.06
COL4A1P02462 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 AC027612.4-201ENST00000605371 583 ntBASIC21.66■■□□□ 1.06
COL4A1P02462 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.66■■□□□ 1.06
COL4A1P02462 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A1P02462 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
COL4A1P02462 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COL4A1P02462 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A1P02462 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
COL4A1P02462 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.66■■□□□ 1.06
COL4A1P02462 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
COL4A1P02462 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.66■■□□□ 1.06
COL4A1P02462 AC004790.2-201ENST00000623588 572 ntBASIC21.66■■□□□ 1.06
COL4A1P02462 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A1P02462 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A1P02462 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A1P02462 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.65■■□□□ 1.06
COL4A1P02462 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A1P02462 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A1P02462 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.65■■□□□ 1.06
COL4A1P02462 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.65■■□□□ 1.06
COL4A1P02462 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.65■■□□□ 1.06
COL4A1P02462 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A1P02462 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A1P02462 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A1P02462 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
COL4A1P02462 AL355385.1-201ENST00000606123 409 ntBASIC21.65■■□□□ 1.06
COL4A1P02462 PGM5P2-202ENST00000637225 1043 ntBASIC21.65■■□□□ 1.06
COL4A1P02462 AC022898.2-201ENST00000616822 1312 ntBASIC21.64■■□□□ 1.06
COL4A1P02462 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A1P02462 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC21.64■■□□□ 1.06
COL4A1P02462 AL020996.1-203ENST00000536896 2307 ntBASIC21.64■■□□□ 1.06
COL4A1P02462 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A1P02462 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A1P02462 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A1P02462 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A1P02462 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.64■■□□□ 1.05
COL4A1P02462 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A1P02462 GPR89P-201ENST00000407924 1495 ntBASIC21.64■■□□□ 1.05
COL4A1P02462 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC21.64■■□□□ 1.05
COL4A1P02462 DDX43P3-201ENST00000441064 443 ntBASIC21.64■■□□□ 1.05
COL4A1P02462 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.64■■□□□ 1.05
COL4A1P02462 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
COL4A1P02462 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A1P02462 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms