Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.79■□□□□ 0.6
RTN3O95197 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 RCN1P2-201ENST00000398357 915 ntBASIC18.79■□□□□ 0.6
RTN3O95197 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
RTN3O95197 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
RTN3O95197 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.79■□□□□ 0.6
RTN3O95197 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.79■□□□□ 0.6
RTN3O95197 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 AC011467.2-201ENST00000598425 242 ntBASIC18.79■□□□□ 0.6
RTN3O95197 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.79■□□□□ 0.6
RTN3O95197 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 AC135776.1-201ENST00000319817 2481 ntBASIC18.79■□□□□ 0.6
RTN3O95197 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.79■□□□□ 0.6
RTN3O95197 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.79■□□□□ 0.6
RTN3O95197 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTN3O95197 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.79■□□□□ 0.6
RTN3O95197 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RTN3O95197 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
RTN3O95197 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 AC097374.2-201ENST00000618617 1306 ntBASIC18.78■□□□□ 0.6
RTN3O95197 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN3O95197 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN3O95197 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
RTN3O95197 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.78■□□□□ 0.6
RTN3O95197 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.78■□□□□ 0.6
RTN3O95197 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.78■□□□□ 0.6
RTN3O95197 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.78■□□□□ 0.6
RTN3O95197 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTN3O95197 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
RTN3O95197 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.78■□□□□ 0.6
RTN3O95197 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
RTN3O95197 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN3O95197 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
RTN3O95197 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN3O95197 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.77■□□□□ 0.6
RTN3O95197 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN3O95197 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN3O95197 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 PRORSD1P-202ENST00000563365 2154 ntBASIC18.77■□□□□ 0.6
RTN3O95197 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.77■□□□□ 0.6
RTN3O95197 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.77■□□□□ 0.6
RTN3O95197 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 SAPCD2P3-201ENST00000455031 850 ntBASIC18.77■□□□□ 0.6
RTN3O95197 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
RTN3O95197 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
RTN3O95197 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms