Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 IGHGP-201ENST00000390555 1178 ntBASIC16.61■□□□□ 0.25
HMGN4O00479 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 TSPY12P-201ENST00000421279 868 ntBASIC16.61■□□□□ 0.25
HMGN4O00479 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGN4O00479 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGN4O00479 KRT18P57-201ENST00000443599 1254 ntBASIC16.61■□□□□ 0.25
HMGN4O00479 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGN4O00479 KRT18P38-201ENST00000449496 1282 ntBASIC16.61■□□□□ 0.25
HMGN4O00479 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
HMGN4O00479 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGN4O00479 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
HMGN4O00479 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 LINC01451-201ENST00000623792 534 ntBASIC16.61■□□□□ 0.25
HMGN4O00479 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGN4O00479 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.61■□□□□ 0.25
HMGN4O00479 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HMGN4O00479 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGN4O00479 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGN4O00479 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGN4O00479 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGN4O00479 CROCCP2-202ENST00000412962 2773 ntBASIC16.6■□□□□ 0.25
HMGN4O00479 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HMGN4O00479 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
HMGN4O00479 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HMGN4O00479 HBZP1-201ENST00000354915 429 ntBASIC16.6■□□□□ 0.25
HMGN4O00479 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 MIR662-201ENST00000384847 95 ntBASIC16.6■□□□□ 0.25
HMGN4O00479 RNF152P1-201ENST00000397754 604 ntBASIC16.6■□□□□ 0.25
HMGN4O00479 TSPY5P-201ENST00000426936 936 ntBASIC16.6■□□□□ 0.25
HMGN4O00479 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 AC112698.1-201ENST00000510299 916 ntBASIC16.6■□□□□ 0.25
HMGN4O00479 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGN4O00479 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HMGN4O00479 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGN4O00479 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGN4O00479 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HMGN4O00479 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGN4O00479 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGN4O00479 AC080080.1-201ENST00000625121 2420 ntBASIC16.59■□□□□ 0.25
HMGN4O00479 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGN4O00479 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HMGN4O00479 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
HMGN4O00479 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGN4O00479 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGN4O00479 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.59■□□□□ 0.25
HMGN4O00479 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
HMGN4O00479 AP003733.1-201ENST00000491725 852 ntBASIC16.59■□□□□ 0.25
HMGN4O00479 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 ZNF444P1-201ENST00000559497 298 ntBASIC16.59■□□□□ 0.25
HMGN4O00479 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGN4O00479 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.59■□□□□ 0.25
HMGN4O00479 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.59■□□□□ 0.25
HMGN4O00479 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGN4O00479 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGN4O00479 AC006011.2-201ENST00000621313 1158 ntBASIC16.59■□□□□ 0.25
HMGN4O00479 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGN4O00479 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGN4O00479 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 AC012313.1-201ENST00000593393 3059 ntBASIC16.59■□□□□ 0.25
HMGN4O00479 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGN4O00479 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
HMGN4O00479 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGN4O00479 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms