Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AKR1C7P-201ENST00000305623 895 ntBASIC18.65■□□□□ 0.58
USP3Q9Y6I4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 FAM220CP-201ENST00000395253 831 ntBASIC18.65■□□□□ 0.58
USP3Q9Y6I4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 DDX43P3-201ENST00000441064 443 ntBASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AC122714.2-201ENST00000502787 707 ntBASIC18.65■□□□□ 0.58
USP3Q9Y6I4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AC116407.2-201ENST00000613639 860 ntBASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AL691432.3-201ENST00000621860 400 ntBASIC18.65■□□□□ 0.58
USP3Q9Y6I4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USP3Q9Y6I4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
USP3Q9Y6I4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
USP3Q9Y6I4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 AC132008.2-207ENST00000454517 770 ntBASIC18.64■□□□□ 0.57
USP3Q9Y6I4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 EMBP1-201ENST00000458200 901 ntBASIC18.64■□□□□ 0.57
USP3Q9Y6I4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 LINC01711-201ENST00000598340 967 ntBASIC18.64■□□□□ 0.57
USP3Q9Y6I4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 REXO1L6P-202ENST00000619970 1078 ntBASIC18.64■□□□□ 0.57
USP3Q9Y6I4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 AC009949.1-201ENST00000623048 1830 ntBASIC18.64■□□□□ 0.57
USP3Q9Y6I4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP3Q9Y6I4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP3Q9Y6I4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms