Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC33.76■■■□□ 2.99
SHROOM4Q9ULL8 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC33.76■■■□□ 2.99
SHROOM4Q9ULL8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC33.76■■■□□ 2.99
SHROOM4Q9ULL8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
SHROOM4Q9ULL8 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC33.76■■■□□ 2.99
SHROOM4Q9ULL8 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
SHROOM4Q9ULL8 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 SRP19-202ENST00000445150 833 ntTSL 2 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 KRT18P2-201ENST00000447938 1258 ntBASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 PUS1-205ENST00000535067 838 ntTSL 3 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC33.75■■■□□ 2.99
SHROOM4Q9ULL8 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 AC106028.4-201ENST00000614509 607 ntBASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SHROOM4Q9ULL8 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 TSEN15P1-201ENST00000423257 515 ntBASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 AC007967.3-201ENST00000434308 558 ntBASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 GREM1-201ENST00000560677 623 ntTSL 4 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 TCAP-202ENST00000578283 583 ntTSL 5 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 SDCCAG3P1-201ENST00000589292 1150 ntBASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 AC005593.1-201ENST00000624894 515 ntBASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 SIGLEC16-201ENST00000599858 1437 ntBASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 WIZP1-201ENST00000531444 2299 ntBASIC33.73■■■□□ 2.99
SHROOM4Q9ULL8 AC093503.3-201ENST00000624917 2352 ntBASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 AC093010.1-201ENST00000473625 1624 ntBASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 AC010460.3-201ENST00000511359 1579 ntBASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
SHROOM4Q9ULL8 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 AL022326.1-202ENST00000641533 845 ntBASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC33.71■■■□□ 2.99
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms