Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
SIX2Q9NPC8 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SIX2Q9NPC8 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
SIX2Q9NPC8 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SIX2Q9NPC8 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.14■□□□□ 0.66
SIX2Q9NPC8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 AL645929.1-201ENST00000420084 975 ntBASIC19.14■□□□□ 0.65
SIX2Q9NPC8 AC096633.1-201ENST00000422446 749 ntBASIC19.14■□□□□ 0.65
SIX2Q9NPC8 AC005104.2-201ENST00000427818 678 ntBASIC19.14■□□□□ 0.65
SIX2Q9NPC8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 AL023806.1-201ENST00000603994 1649 ntBASIC19.14■□□□□ 0.65
SIX2Q9NPC8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX2Q9NPC8 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 AL845331.1-201ENST00000424978 1190 ntBASIC19.13■□□□□ 0.65
SIX2Q9NPC8 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 RN7SL606P-201ENST00000472779 293 ntBASIC19.13■□□□□ 0.65
SIX2Q9NPC8 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
SIX2Q9NPC8 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX2Q9NPC8 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms