Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC116407.2-201ENST00000613639 860 ntBASIC19.91■□□□□ 0.78
VTA1Q9NP79 AL691403.2-201ENST00000618460 490 ntBASIC19.91■□□□□ 0.78
VTA1Q9NP79 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VTA1Q9NP79 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
VTA1Q9NP79 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VTA1Q9NP79 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VTA1Q9NP79 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VTA1Q9NP79 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VTA1Q9NP79 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VTA1Q9NP79 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VTA1Q9NP79 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.91■□□□□ 0.78
VTA1Q9NP79 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 AC093677.2-201ENST00000600169 1863 ntBASIC19.9■□□□□ 0.78
VTA1Q9NP79 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 KLF4P1-201ENST00000412782 1185 ntBASIC19.9■□□□□ 0.78
VTA1Q9NP79 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 AC002347.1-201ENST00000569543 541 ntBASIC19.9■□□□□ 0.78
VTA1Q9NP79 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.9■□□□□ 0.78
VTA1Q9NP79 AC055717.3-201ENST00000622967 595 ntBASIC19.9■□□□□ 0.78
VTA1Q9NP79 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.9■□□□□ 0.78
VTA1Q9NP79 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VTA1Q9NP79 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VTA1Q9NP79 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
VTA1Q9NP79 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 NCF1C-201ENST00000438382 1427 ntBASIC19.89■□□□□ 0.77
VTA1Q9NP79 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 MIR3687-2-201ENST00000577708 61 ntBASIC19.89■□□□□ 0.77
VTA1Q9NP79 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 AC064836.3-201ENST00000607928 673 ntBASIC19.89■□□□□ 0.77
VTA1Q9NP79 AC019129.2-201ENST00000609837 1235 ntBASIC19.89■□□□□ 0.77
VTA1Q9NP79 MIR3687-1-201ENST00000614492 61 ntBASIC19.89■□□□□ 0.77
VTA1Q9NP79 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
VTA1Q9NP79 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VTA1Q9NP79 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 AC120498.9-201ENST00000339021 3867 ntBASIC19.88■□□□□ 0.77
VTA1Q9NP79 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 AC148477.5-201ENST00000625164 1645 ntBASIC19.88■□□□□ 0.77
VTA1Q9NP79 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 ELK2BP-201ENST00000415014 1224 ntBASIC19.88■□□□□ 0.77
VTA1Q9NP79 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 SIGLEC30P-201ENST00000455569 941 ntBASIC19.88■□□□□ 0.77
VTA1Q9NP79 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.88■□□□□ 0.77
VTA1Q9NP79 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VTA1Q9NP79 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VTA1Q9NP79 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VTA1Q9NP79 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VTA1Q9NP79 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VTA1Q9NP79 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms