Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 AL023284.2-201ENST00000405850 579 ntBASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 AC008622.2-201ENST00000617006 1229 ntBASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC112Q8NEF3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 AC026271.3-201ENST00000571884 352 ntBASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 AC011298.2-201ENST00000617989 482 ntBASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 AC073648.6-201ENST00000641589 218 ntBASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC112Q8NEF3 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 CROCCP2-202ENST00000412962 2773 ntBASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 AC069544.1-201ENST00000609399 999 ntBASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC112Q8NEF3 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC112Q8NEF3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC112Q8NEF3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC112Q8NEF3 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC112Q8NEF3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CCDC112Q8NEF3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms