Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 PHGDH-210ENST00000641115 1638 ntBASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 AC137761.2-201ENST00000561729 223 ntBASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 AC145350.3-201ENST00000569033 163 ntBASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 AC087623.3-201ENST00000607047 1098 ntBASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CCDC28AQ8IWP9 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28AQ8IWP9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 CYP21A1P-202ENST00000354927 1481 ntBASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 AC093677.2-201ENST00000600169 1863 ntBASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 AC126177.1-201ENST00000547829 2218 ntBASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 UBE2DNL-204ENST00000602536 740 ntBASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 MIR5787-201ENST00000611784 55 ntBASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 CYP2T1P-202ENST00000641596 2535 ntBASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28AQ8IWP9 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms