Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LONRF3Q496Y0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LONRF3Q496Y0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LONRF3Q496Y0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
LONRF3Q496Y0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.34■□□□□ 0.85
LONRF3Q496Y0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.34■□□□□ 0.85
LONRF3Q496Y0 AC079602.3-201ENST00000623931 403 ntBASIC20.34■□□□□ 0.85
LONRF3Q496Y0 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LONRF3Q496Y0 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.33■□□□□ 0.85
LONRF3Q496Y0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LONRF3Q496Y0 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.33■□□□□ 0.84
LONRF3Q496Y0 LINC00167-201ENST00000530583 1419 ntBASIC20.33■□□□□ 0.84
LONRF3Q496Y0 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
LONRF3Q496Y0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
LONRF3Q496Y0 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LONRF3Q496Y0 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.33■□□□□ 0.84
LONRF3Q496Y0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.84
LONRF3Q496Y0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 AL645929.1-201ENST00000420084 975 ntBASIC20.32■□□□□ 0.84
LONRF3Q496Y0 PVRIG2P-201ENST00000435460 978 ntBASIC20.32■□□□□ 0.84
LONRF3Q496Y0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 AC012313.10-201ENST00000623509 926 ntBASIC20.32■□□□□ 0.84
LONRF3Q496Y0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.32■□□□□ 0.84
LONRF3Q496Y0 AC090340.1-201ENST00000620778 4980 ntBASIC20.32■□□□□ 0.84
LONRF3Q496Y0 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 HCG11-201ENST00000411553 5696 ntBASIC20.31■□□□□ 0.84
LONRF3Q496Y0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.31■□□□□ 0.84
LONRF3Q496Y0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms