Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 AC021087.4-201ENST00000563761 564 ntBASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 AC024563.2-201ENST00000603282 481 ntBASIC17.17■□□□□ 0.34
COL28A1Q2UY09 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 KRT8P32-201ENST00000512863 1461 ntBASIC17.17■□□□□ 0.34
COL28A1Q2UY09 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 PAWRP1-201ENST00000451083 565 ntBASIC17.16■□□□□ 0.34
COL28A1Q2UY09 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 AC020763.4-201ENST00000623414 4170 ntBASIC17.16■□□□□ 0.34
COL28A1Q2UY09 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 RCC2P3-201ENST00000418112 1537 ntBASIC17.16■□□□□ 0.34
COL28A1Q2UY09 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL28A1Q2UY09 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 NOC2LP1-202ENST00000452600 2235 ntBASIC17.15■□□□□ 0.34
COL28A1Q2UY09 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 AC012640.2-201ENST00000561606 901 ntBASIC17.15■□□□□ 0.34
COL28A1Q2UY09 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL28A1Q2UY09 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL28A1Q2UY09 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL28A1Q2UY09 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms