Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC10.96□□□□□ -0.65
HSPG2P98160 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC10.96□□□□□ -0.65
HSPG2P98160 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 GID4-202ENST00000376345 1391 ntTSL 3 BASIC10.96□□□□□ -0.65
HSPG2P98160 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 PTCHD3P3-201ENST00000403073 906 ntBASIC10.96□□□□□ -0.65
HSPG2P98160 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 S100A2-206ENST00000497140 697 ntTSL 2 BASIC10.96□□□□□ -0.65
HSPG2P98160 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HSPG2P98160 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
HSPG2P98160 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC10.96□□□□□ -0.66
HSPG2P98160 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
HSPG2P98160 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC10.96□□□□□ -0.66
HSPG2P98160 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC10.96□□□□□ -0.66
HSPG2P98160 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
HSPG2P98160 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
HSPG2P98160 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
HSPG2P98160 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC10.96□□□□□ -0.66
HSPG2P98160 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
HSPG2P98160 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC10.96□□□□□ -0.66
HSPG2P98160 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC10.96□□□□□ -0.66
HSPG2P98160 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
HSPG2P98160 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC10.96□□□□□ -0.66
HSPG2P98160 AL157384.1-201ENST00000445995 2473 ntBASIC10.96□□□□□ -0.66
HSPG2P98160 TSFM-210ENST00000550559 897 ntTSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 AC243562.1-201ENST00000560672 389 ntBASIC10.95□□□□□ -0.66
HSPG2P98160 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC10.95□□□□□ -0.66
HSPG2P98160 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC10.95□□□□□ -0.66
HSPG2P98160 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 NKTR-203ENST00000442970 646 ntTSL 2 BASIC10.95□□□□□ -0.66
HSPG2P98160 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC10.95□□□□□ -0.66
HSPG2P98160 LINC01225-203ENST00000563550 1244 ntBASIC10.95□□□□□ -0.66
HSPG2P98160 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC10.95□□□□□ -0.66
HSPG2P98160 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 AC141586.3-201ENST00000562166 1838 ntBASIC10.95□□□□□ -0.66
HSPG2P98160 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
HSPG2P98160 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 AL592309.1-201ENST00000443127 649 ntBASIC10.95□□□□□ -0.66
HSPG2P98160 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 AC026150.2-201ENST00000564693 1156 ntBASIC10.95□□□□□ -0.66
HSPG2P98160 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC10.95□□□□□ -0.66
HSPG2P98160 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 GPER1-207ENST00000619052 571 ntTSL 2 BASIC10.95□□□□□ -0.66
HSPG2P98160 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC10.95□□□□□ -0.66
HSPG2P98160 FALEC-201ENST00000416894 566 ntTSL 3 BASIC10.95□□□□□ -0.66
HSPG2P98160 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
HSPG2P98160 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
HSPG2P98160 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
HSPG2P98160 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
HSPG2P98160 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC10.94□□□□□ -0.66
HSPG2P98160 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC10.94□□□□□ -0.66
HSPG2P98160 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 KLF4P1-201ENST00000412782 1185 ntBASIC10.94□□□□□ -0.66
HSPG2P98160 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC10.94□□□□□ -0.66
HSPG2P98160 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC10.94□□□□□ -0.66
HSPG2P98160 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC10.94□□□□□ -0.66
HSPG2P98160 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC10.94□□□□□ -0.66
HSPG2P98160 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
HSPG2P98160 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
HSPG2P98160 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms