Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SUMO3P55854 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.19■□□□□ 0.18
SUMO3P55854 AC007613.1-201ENST00000572811 2597 ntBASIC16.19■□□□□ 0.18
SUMO3P55854 AC125634.1-201ENST00000438758 1403 ntBASIC16.19■□□□□ 0.18
SUMO3P55854 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 TOB2P1-201ENST00000469761 992 ntBASIC16.18■□□□□ 0.18
SUMO3P55854 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 AC009533.2-201ENST00000543664 586 ntBASIC16.18■□□□□ 0.18
SUMO3P55854 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 AC005336.2-201ENST00000593183 939 ntBASIC16.18■□□□□ 0.18
SUMO3P55854 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SUMO3P55854 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 HTR7P1-202ENST00000624664 4411 ntBASIC16.18■□□□□ 0.18
SUMO3P55854 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.18■□□□□ 0.18
SUMO3P55854 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
SUMO3P55854 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.17■□□□□ 0.18
SUMO3P55854 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.17■□□□□ 0.18
SUMO3P55854 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 UPK3BP1-201ENST00000428678 509 ntBASIC16.17■□□□□ 0.18
SUMO3P55854 LINC00265-3P-201ENST00000447588 903 ntBASIC16.17■□□□□ 0.18
SUMO3P55854 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.17■□□□□ 0.18
SUMO3P55854 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.17■□□□□ 0.18
SUMO3P55854 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.17■□□□□ 0.18
SUMO3P55854 MIR3180-1-201ENST00000580374 94 ntBASIC16.17■□□□□ 0.18
SUMO3P55854 MIR3180-3-201ENST00000584616 94 ntBASIC16.17■□□□□ 0.18
SUMO3P55854 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.17■□□□□ 0.18
SUMO3P55854 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SUMO3P55854 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.17■□□□□ 0.18
SUMO3P55854 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 LINC01451-201ENST00000623792 534 ntBASIC16.17■□□□□ 0.18
SUMO3P55854 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.17■□□□□ 0.18
SUMO3P55854 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SUMO3P55854 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SUMO3P55854 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.16■□□□□ 0.18
SUMO3P55854 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SUMO3P55854 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.16■□□□□ 0.18
SUMO3P55854 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SUMO3P55854 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SUMO3P55854 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.16■□□□□ 0.18
SUMO3P55854 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SUMO3P55854 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SUMO3P55854 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SUMO3P55854 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SUMO3P55854 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms