Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
RFX3P48380 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RFX3P48380 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RFX3P48380 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
RFX3P48380 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RFX3P48380 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.83■□□□□ 0.28
RFX3P48380 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.83■□□□□ 0.28
RFX3P48380 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.83■□□□□ 0.28
RFX3P48380 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 STARP1-201ENST00000397973 869 ntBASIC16.83■□□□□ 0.28
RFX3P48380 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.83■□□□□ 0.28
RFX3P48380 HOMER2P1-201ENST00000455653 964 ntBASIC16.83■□□□□ 0.28
RFX3P48380 DUX4L26-201ENST00000489078 1255 ntBASIC16.83■□□□□ 0.28
RFX3P48380 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.83■□□□□ 0.28
RFX3P48380 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
RFX3P48380 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.83■□□□□ 0.28
RFX3P48380 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.83■□□□□ 0.28
RFX3P48380 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 AL391807.1-203ENST00000604392 2365 ntBASIC16.83■□□□□ 0.28
RFX3P48380 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
RFX3P48380 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.83■□□□□ 0.28
RFX3P48380 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
RFX3P48380 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RFX3P48380 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
RFX3P48380 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
RFX3P48380 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.82■□□□□ 0.28
RFX3P48380 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.82■□□□□ 0.28
RFX3P48380 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
RFX3P48380 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RFX3P48380 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
RFX3P48380 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RFX3P48380 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.82■□□□□ 0.28
RFX3P48380 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.82■□□□□ 0.28
RFX3P48380 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.82■□□□□ 0.28
RFX3P48380 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.82■□□□□ 0.28
RFX3P48380 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.82■□□□□ 0.28
RFX3P48380 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.82■□□□□ 0.28
RFX3P48380 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.82■□□□□ 0.28
RFX3P48380 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
RFX3P48380 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RFX3P48380 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RFX3P48380 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
RFX3P48380 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.81■□□□□ 0.28
RFX3P48380 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms