Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.48■□□□□ 0.87
SMARCA1P28370 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SMARCA1P28370 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCA1P28370 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCA1P28370 AL049757.1-201ENST00000616842 1596 ntBASIC20.48■□□□□ 0.87
SMARCA1P28370 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCA1P28370 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SMARCA1P28370 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.48■□□□□ 0.87
SMARCA1P28370 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.48■□□□□ 0.87
SMARCA1P28370 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCA1P28370 AC132008.2-207ENST00000454517 770 ntBASIC20.48■□□□□ 0.87
SMARCA1P28370 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.48■□□□□ 0.87
SMARCA1P28370 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.48■□□□□ 0.87
SMARCA1P28370 AC106795.1-205ENST00000512851 1056 ntBASIC20.48■□□□□ 0.87
SMARCA1P28370 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCA1P28370 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.48■□□□□ 0.87
SMARCA1P28370 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.48■□□□□ 0.87
SMARCA1P28370 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SMARCA1P28370 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCA1P28370 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCA1P28370 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.47■□□□□ 0.87
SMARCA1P28370 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.47■□□□□ 0.87
SMARCA1P28370 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCA1P28370 LINC01451-201ENST00000623792 534 ntBASIC20.47■□□□□ 0.87
SMARCA1P28370 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCA1P28370 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCA1P28370 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.47■□□□□ 0.87
SMARCA1P28370 AL353593.2-201ENST00000602529 1483 ntBASIC20.47■□□□□ 0.87
SMARCA1P28370 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SMARCA1P28370 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
SMARCA1P28370 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.47■□□□□ 0.87
SMARCA1P28370 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCA1P28370 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCA1P28370 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCA1P28370 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCA1P28370 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCA1P28370 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCA1P28370 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.46■□□□□ 0.87
SMARCA1P28370 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCA1P28370 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCA1P28370 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SMARCA1P28370 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCA1P28370 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCA1P28370 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCA1P28370 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.46■□□□□ 0.87
SMARCA1P28370 RBM17P3-201ENST00000417687 1192 ntBASIC20.46■□□□□ 0.87
SMARCA1P28370 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.46■□□□□ 0.87
SMARCA1P28370 AC002558.1-201ENST00000488906 803 ntBASIC20.46■□□□□ 0.87
SMARCA1P28370 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
SMARCA1P28370 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.46■□□□□ 0.87
SMARCA1P28370 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.46■□□□□ 0.87
SMARCA1P28370 AC019129.2-201ENST00000609837 1235 ntBASIC20.46■□□□□ 0.87
SMARCA1P28370 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SMARCA1P28370 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.46■□□□□ 0.87
SMARCA1P28370 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCA1P28370 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCA1P28370 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCA1P28370 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.46■□□□□ 0.87
SMARCA1P28370 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCA1P28370 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.46■□□□□ 0.87
SMARCA1P28370 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCA1P28370 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 AP005117.1-201ENST00000584346 1413 ntBASIC20.45■□□□□ 0.86
SMARCA1P28370 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.45■□□□□ 0.86
SMARCA1P28370 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SMARCA1P28370 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SMARCA1P28370 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.45■□□□□ 0.86
SMARCA1P28370 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.45■□□□□ 0.86
SMARCA1P28370 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.45■□□□□ 0.86
SMARCA1P28370 FAAHP1-202ENST00000446499 1238 ntBASIC20.45■□□□□ 0.86
SMARCA1P28370 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
SMARCA1P28370 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.45■□□□□ 0.86
SMARCA1P28370 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.45■□□□□ 0.86
SMARCA1P28370 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.45■□□□□ 0.86
SMARCA1P28370 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCA1P28370 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms