Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 SUMF2-207ENST00000423763 1792 ntTSL 214.49□□□□□ -0.093e-8■■■□□ 17.1
RPS3P23396 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.13e-8■■■□□ 17.1
RPS3P23396 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.13e-8■■■□□ 17.1
RPS3P23396 RCE1-209ENST00000534822 366 ntTSL 214.34□□□□□ -0.113e-8■■■□□ 17.1
RPS3P23396 ITGB2-219ENST00000522688 606 ntTSL 414.26□□□□□ -0.132e-6■■■□□ 17.1
RPS3P23396 TTC3-219ENST00000485402 3626 ntTSL 514.12□□□□□ -0.153e-8■■■□□ 17.1
RPS3P23396 SUMF2-212ENST00000447501 1249 ntTSL 213.94□□□□□ -0.183e-8■■■□□ 17.1
RPS3P23396 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.193e-8■■■□□ 17.1
RPS3P23396 ITGB2-216ENST00000520389 568 ntTSL 513.61□□□□□ -0.232e-6■■■□□ 17.1
RPS3P23396 ITGB2-213ENST00000517563 571 ntTSL 413.61□□□□□ -0.232e-6■■■□□ 17.1
RPS3P23396 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.274e-6■■■□□ 17.1
RPS3P23396 BNIP3-202ENST00000540159 3066 ntTSL 1 (best)13.24□□□□□ -0.293e-8■■■□□ 17.1
RPS3P23396 SUMF2-219ENST00000531229 737 ntTSL 213.21□□□□□ -0.293e-8■■■□□ 17.1
RPS3P23396 P3H3-202ENST00000536140 3226 ntTSL 213.2□□□□□ -0.33e-8■■■□□ 17.1
RPS3P23396 SUMF2-211ENST00000438133 1771 ntTSL 1 (best)13.03□□□□□ -0.323e-8■■■□□ 17.1
RPS3P23396 ITGB2-220ENST00000522931 573 ntTSL 212.95□□□□□ -0.342e-6■■■□□ 17.1
RPS3P23396 ITGB2-217ENST00000521987 563 ntTSL 412.76□□□□□ -0.372e-6■■■□□ 17.1
RPS3P23396 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC12.53□□□□□ -0.43e-8■■■□□ 17.1
RPS3P23396 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.573e-8■■■□□ 17.1
RPS3P23396 TTC3-202ENST00000355666 7712 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.853e-8■■■□□ 17.1
RPS3P23396 PIGT-235ENST00000638967 2194 ntTSL 57.87□□□□□ -1.153e-8■■■□□ 17.1
RPS3P23396 ARPC2-213ENST00000478612 528 ntTSL 30.51□□□□□ -2.333e-8■■■□□ 17.1
RPS3P23396 MCM7-211ENST00000491245 648 ntTSL 1 (best)8.65□□□□□ -1.022e-7■■■□□ 17.1
RPS3P23396 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.143e-6■■■□□ 17.1
RPS3P23396 ADAR-201ENST00000368471 6515 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.823e-6■■■□□ 17.1
RPS3P23396 ADAR-208ENST00000529168 3585 ntAPPRIS ALT2 TSL 56.54□□□□□ -1.363e-6■■■□□ 17.1
RPS3P23396 FKBP4-201ENST00000001008 3732 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.523e-6■■■□□ 17.1
RPS3P23396 SLC9A3R1-205ENST00000583369 841 ntTSL 322.63■■□□□ 1.219e-9■■■□□ 17.1
RPS3P23396 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.079e-7■■■□□ 17.1
RPS3P23396 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.019e-7■■■□□ 17.1
RPS3P23396 PPT2-EGFL8-207ENST00000585246 1051 ntAPPRIS ALT2 TSL 220.74■□□□□ 0.919e-7■■■□□ 17.1
RPS3P23396 PPT2-EGFL8-201ENST00000421600 999 ntAPPRIS ALT2 TSL 518.45■□□□□ 0.549e-7■■■□□ 17.1
RPS3P23396 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.469e-7■■■□□ 17.1
RPS3P23396 PPT2-EGFL8-206ENST00000583227 1540 ntAPPRIS ALT2 TSL 517.34■□□□□ 0.379e-7■■■□□ 17.1
RPS3P23396 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.339e-7■■■□□ 17.1
RPS3P23396 PPT2-EGFL8-204ENST00000453656 1327 ntTSL 216.54■□□□□ 0.249e-7■■■□□ 17.1
RPS3P23396 PPT2-EGFL8-203ENST00000428388 2878 ntAPPRIS P5 TSL 215.38■□□□□ 0.059e-7■■■□□ 17.1
RPS3P23396 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.119e-7■■■□□ 17.1
RPS3P23396 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC12.95□□□□□ -0.349e-7■■■□□ 17.1
RPS3P23396 PPT2-EGFL8-205ENST00000479001 944 ntTSL 510.5□□□□□ -0.739e-7■■■□□ 17.1
RPS3P23396 POLR1A-203ENST00000409681 6454 ntTSL 5 BASIC9.84□□□□□ -0.832e-7■■■□□ 17.1
RPS3P23396 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.362e-7■■■□□ 17.1
RPS3P23396 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.172e-6■■■□□ 17.1
RPS3P23396 AC087289.3-201ENST00000590947 1886 ntAPPRIS ALT2 TSL 216.89■□□□□ 0.292e-6■■■□□ 17.1
RPS3P23396 AC087289.3-202ENST00000593156 4270 ntTSL 211.88□□□□□ -0.512e-6■■■□□ 17.1
RPS3P23396 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.59■□□□□ 0.899e-7■■■□□ 17.1
RPS3P23396 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.79e-7■■■□□ 17.1
RPS3P23396 ACADVL-201ENST00000322910 2352 ntTSL 218.53■□□□□ 0.569e-7■■■□□ 17.1
RPS3P23396 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.02■□□□□ 0.479e-7■■■□□ 17.1
RPS3P23396 SLC25A1-203ENST00000461267 804 ntTSL 322.37■■□□□ 1.174e-11■■■□□ 17.1
RPS3P23396 RNF5-204ENST00000487940 357 ntTSL 215.29■□□□□ 0.049e-7■■■□□ 17.1
RPS3P23396 MCM5-206ENST00000451351 450 ntTSL 49.97□□□□□ -0.814e-21■■■□□ 17.1
RPS3P23396 TMEM209-205ENST00000471985 571 ntTSL 45.77□□□□□ -1.494e-7■■■□□ 17.1
RPS3P23396 FN1-227ENST00000498719 2433 ntTSL 28.53□□□□□ -1.041e-323■■■□□ 17.1
RPS3P23396 COX4I1-217ENST00000569997 3946 nt9.27□□□□□ -0.931e-9■■■□□ 17.1
RPS3P23396 CADM1-211ENST00000541434 1112 ntTSL 1 (best)15.59■□□□□ 0.091e-9■■■□□ 17.1
RPS3P23396 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.59■□□□□ 0.735e-8■■■□□ 17.1
RPS3P23396 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.9■□□□□ 0.625e-8■■■□□ 17.1
RPS3P23396 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.467e-8■■■□□ 17.1
RPS3P23396 HNRNPK-206ENST00000457156 1283 ntTSL 517.27■□□□□ 0.367e-8■■■□□ 17.1
RPS3P23396 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.017e-8■■■□□ 17.1
RPS3P23396 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC8.5□□□□□ -1.057e-8■■■□□ 17.1
RPS3P23396 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC8.45□□□□□ -1.067e-8■■■□□ 17.1
RPS3P23396 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.72■□□□□ 0.591e-7■■■□□ 17
RPS3P23396 BST2-202ENST00000527220 335 ntTSL 29.1□□□□□ -0.959e-7■■■□□ 17
RPS3P23396 ETFA-206ENST00000559075 1735 ntTSL 221.35■■□□□ 1.012e-7■■■□□ 17
RPS3P23396 ETFA-211ENST00000560044 1054 ntTSL 517.87■□□□□ 0.452e-7■■■□□ 17
RPS3P23396 ETFA-218ENST00000560899 910 ntTSL 516.84■□□□□ 0.292e-7■■■□□ 17
RPS3P23396 SLC3A2-210ENST00000537839 584 ntTSL 59.1□□□□□ -0.954e-7■■■□□ 17
RPS3P23396 SHMT2-204ENST00000553324 566 ntTSL 414.93□□□□□ -0.026e-7■■■□□ 17
RPS3P23396 SHMT2-235ENST00000557740 569 ntTSL 414.06□□□□□ -0.166e-7■■■□□ 17
RPS3P23396 TMEM59L-203ENST00000594859 1557 ntTSL 1 (best)18.21■□□□□ 0.511e-6■■■□□ 17
RPS3P23396 DHX9-207ENST00000485081 2531 ntTSL 211.17□□□□□ -0.628e-9■■■□□ 17
RPS3P23396 HLA-K-203ENST00000430151 1046 ntBASIC15.11■□□□□ 0.011e-9■■■□□ 17
RPS3P23396 HSBP1-202ENST00000567382 889 ntTSL 223.8■■□□□ 1.42e-8■■■□□ 17
RPS3P23396 HSBP1-204ENST00000570259 1020 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.482e-8■■■□□ 17
RPS3P23396 HSBP1-201ENST00000433866 8784 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.742e-8■■■□□ 17
RPS3P23396 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.142e-9■■■□□ 17
RPS3P23396 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.5■□□□□ 0.232e-9■■■□□ 17
RPS3P23396 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.63□□□□□ -0.072e-9■■■□□ 17
RPS3P23396 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.43□□□□□ -0.262e-9■■■□□ 17
RPS3P23396 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC13.37□□□□□ -0.272e-9■■■□□ 17
RPS3P23396 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.041e-8■■■□□ 17
RPS3P23396 TFR2-207ENST00000473374 891 ntTSL 520.08■□□□□ 0.818e-8■■■□□ 17
RPS3P23396 LPCAT3-202ENST00000535021 802 ntTSL 48.81□□□□□ -19e-7■■■□□ 17
RPS3P23396 TMEM50A-206ENST00000498135 776 ntTSL 317.94■□□□□ 0.463e-7■■■□□ 17
RPS3P23396 TMEM50A-203ENST00000480937 1102 ntTSL 217.69■□□□□ 0.423e-7■■■□□ 17
RPS3P23396 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.033e-7■■■□□ 17
RPS3P23396 TMEM50A-205ENST00000491936 965 ntTSL 1 (best)15.05■□□□□ -03e-7■■■□□ 17
RPS3P23396 COX4I1-204ENST00000562929 452 ntTSL 512.58□□□□□ -0.42e-9■■■□□ 17
RPS3P23396 DPP4-204ENST00000434918 2674 ntTSL 1 (best)12.62□□□□□ -0.397e-7■■■□□ 17
RPS3P23396 DPP4-201ENST00000360534 3904 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.657e-7■■■□□ 17
RPS3P23396 CPED1-204ENST00000428526 2219 ntTSL 27.47□□□□□ -1.212e-10■■■□□ 17
RPS3P23396 CPED1-205ENST00000443817 1118 ntTSL 1 (best)4.49□□□□□ -1.692e-10■■■□□ 17
RPS3P23396 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.273e-11■■■□□ 17
RPS3P23396 C3-215ENST00000601008 303 ntTSL 53.81□□□□□ -1.83e-27■■■□□ 17
RPS3P23396 APLP2-220ENST00000533618 574 ntTSL 420.11■□□□□ 0.816e-14■■■□□ 17
RPS3P23396 APLP2-221ENST00000533713 560 ntTSL 420.11■□□□□ 0.816e-14■■■□□ 17
RPS3P23396 APLP2-209ENST00000527702 579 ntTSL 420.11■□□□□ 0.816e-14■■■□□ 17
RPS3P23396 APLP2-224ENST00000534582 556 ntTSL 520.11■□□□□ 0.816e-14■■■□□ 17
Retrieved 100 of 24,271 protein–RNA pairs in 250.6 ms