Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.32■□□□□ 0.68
RNF40O75150 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF40O75150 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF40O75150 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF40O75150 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF40O75150 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.32■□□□□ 0.68
RNF40O75150 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF40O75150 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
RNF40O75150 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.31■□□□□ 0.68
RNF40O75150 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
RNF40O75150 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
RNF40O75150 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF40O75150 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.31■□□□□ 0.68
RNF40O75150 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 ATP5G2P1-201ENST00000433580 426 ntBASIC19.31■□□□□ 0.68
RNF40O75150 SPDYE13P-201ENST00000445314 798 ntBASIC19.31■□□□□ 0.68
RNF40O75150 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.31■□□□□ 0.68
RNF40O75150 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF40O75150 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RNF40O75150 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF40O75150 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
RNF40O75150 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF40O75150 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.31■□□□□ 0.68
RNF40O75150 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RNF40O75150 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF40O75150 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
RNF40O75150 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
RNF40O75150 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.3■□□□□ 0.68
RNF40O75150 AC138028.4-201ENST00000564984 1845 ntBASIC19.3■□□□□ 0.68
RNF40O75150 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF40O75150 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
RNF40O75150 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF40O75150 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF40O75150 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF40O75150 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RNF40O75150 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RNF40O75150 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
RNF40O75150 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF40O75150 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF40O75150 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF40O75150 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RNF40O75150 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF40O75150 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF40O75150 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
RNF40O75150 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF40O75150 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
RNF40O75150 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF40O75150 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF40O75150 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms