Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SDC3O75056 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SDC3O75056 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDC3O75056 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SDC3O75056 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SDC3O75056 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.44■□□□□ 0.38
SDC3O75056 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SDC3O75056 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.44■□□□□ 0.38
SDC3O75056 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.44■□□□□ 0.38
SDC3O75056 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.44■□□□□ 0.38
SDC3O75056 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.44■□□□□ 0.38
SDC3O75056 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.44■□□□□ 0.38
SDC3O75056 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.44■□□□□ 0.38
SDC3O75056 AC034105.1-201ENST00000563488 319 ntBASIC17.44■□□□□ 0.38
SDC3O75056 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.44■□□□□ 0.38
SDC3O75056 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.44■□□□□ 0.38
SDC3O75056 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.44■□□□□ 0.38
SDC3O75056 Z83851.2-201ENST00000609564 659 ntBASIC17.44■□□□□ 0.38
SDC3O75056 AP000867.4-201ENST00000641616 219 ntBASIC17.44■□□□□ 0.38
SDC3O75056 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 AC004817.3-201ENST00000602957 2129 ntBASIC17.44■□□□□ 0.38
SDC3O75056 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDC3O75056 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.43■□□□□ 0.38
SDC3O75056 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.43■□□□□ 0.38
SDC3O75056 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.43■□□□□ 0.38
SDC3O75056 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 PGAM5P1-201ENST00000518923 814 ntBASIC17.43■□□□□ 0.38
SDC3O75056 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.43■□□□□ 0.38
SDC3O75056 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.43■□□□□ 0.38
SDC3O75056 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SDC3O75056 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.43■□□□□ 0.38
SDC3O75056 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.43■□□□□ 0.38
SDC3O75056 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 AC010460.3-201ENST00000511359 1579 ntBASIC17.43■□□□□ 0.38
SDC3O75056 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.43■□□□□ 0.38
SDC3O75056 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SDC3O75056 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
SDC3O75056 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC3O75056 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
SDC3O75056 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 AC098818.2-201ENST00000564925 2320 ntBASIC17.42■□□□□ 0.38
SDC3O75056 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
SDC3O75056 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.42■□□□□ 0.38
SDC3O75056 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.42■□□□□ 0.38
SDC3O75056 AC105339.3-201ENST00000560043 636 ntBASIC17.42■□□□□ 0.38
SDC3O75056 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.42■□□□□ 0.38
SDC3O75056 AC107918.4-202ENST00000641623 219 ntBASIC17.42■□□□□ 0.38
SDC3O75056 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms