Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM13O60858 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRIM13O60858 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM13O60858 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM13O60858 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 AL121761.2-201ENST00000598007 1648 ntBASIC17.63■□□□□ 0.41
TRIM13O60858 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 AL158047.1-201ENST00000445918 881 ntBASIC17.63■□□□□ 0.41
TRIM13O60858 TSPY20P-201ENST00000450910 630 ntBASIC17.63■□□□□ 0.41
TRIM13O60858 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.63■□□□□ 0.41
TRIM13O60858 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM13O60858 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM13O60858 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.63■□□□□ 0.41
TRIM13O60858 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM13O60858 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM13O60858 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
TRIM13O60858 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 GCSHP5-201ENST00000443090 522 ntBASIC17.62■□□□□ 0.41
TRIM13O60858 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM13O60858 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM13O60858 AC098590.1-201ENST00000468126 897 ntBASIC17.62■□□□□ 0.41
TRIM13O60858 SEC1P-202ENST00000473944 940 ntBASIC17.62■□□□□ 0.41
TRIM13O60858 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.62■□□□□ 0.41
TRIM13O60858 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM13O60858 FITM1-202ENST00000559294 800 ntBASIC17.62■□□□□ 0.41
TRIM13O60858 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM13O60858 AC010653.2-201ENST00000623505 997 ntBASIC17.62■□□□□ 0.41
TRIM13O60858 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM13O60858 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM13O60858 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM13O60858 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM13O60858 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 LINC00167-201ENST00000530583 1419 ntBASIC17.62■□□□□ 0.41
TRIM13O60858 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
TRIM13O60858 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
TRIM13O60858 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM13O60858 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM13O60858 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM13O60858 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM13O60858 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TRIM13O60858 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.61■□□□□ 0.41
TRIM13O60858 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.61■□□□□ 0.41
TRIM13O60858 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 AC116407.2-201ENST00000613639 860 ntBASIC17.61■□□□□ 0.41
TRIM13O60858 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
TRIM13O60858 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM13O60858 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TRIM13O60858 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 NKILA-202ENST00000614771 2598 ntBASIC17.61■□□□□ 0.41
TRIM13O60858 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
TRIM13O60858 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TRIM13O60858 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TRIM13O60858 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM13O60858 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM13O60858 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
TRIM13O60858 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms