Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.05■□□□□ 0.8
MSH4O15457 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH4O15457 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH4O15457 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.05■□□□□ 0.8
MSH4O15457 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 COX5BP2-201ENST00000392354 334 ntBASIC20.05■□□□□ 0.8
MSH4O15457 FAM220CP-201ENST00000395253 831 ntBASIC20.05■□□□□ 0.8
MSH4O15457 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 AC132008.2-207ENST00000454517 770 ntBASIC20.05■□□□□ 0.8
MSH4O15457 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.05■□□□□ 0.8
MSH4O15457 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
MSH4O15457 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
MSH4O15457 AC116407.2-201ENST00000613639 860 ntBASIC20.05■□□□□ 0.8
MSH4O15457 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.05■□□□□ 0.8
MSH4O15457 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
MSH4O15457 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.05■□□□□ 0.8
MSH4O15457 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH4O15457 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
MSH4O15457 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
MSH4O15457 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH4O15457 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
MSH4O15457 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
MSH4O15457 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH4O15457 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 DDX43P3-201ENST00000441064 443 ntBASIC20.04■□□□□ 0.8
MSH4O15457 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH4O15457 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 AL691432.3-201ENST00000621860 400 ntBASIC20.04■□□□□ 0.8
MSH4O15457 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH4O15457 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH4O15457 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH4O15457 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH4O15457 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
MSH4O15457 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH4O15457 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH4O15457 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH4O15457 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MSH4O15457 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH4O15457 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH4O15457 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH4O15457 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH4O15457 REXO1L6P-202ENST00000619970 1078 ntBASIC20.03■□□□□ 0.8
MSH4O15457 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
MSH4O15457 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
MSH4O15457 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH4O15457 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MSH4O15457 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH4O15457 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms