Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
CBX4O00257 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CBX4O00257 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
CBX4O00257 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.28■□□□□ 0.52
CBX4O00257 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.28■□□□□ 0.52
CBX4O00257 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.28■□□□□ 0.52
CBX4O00257 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CBX4O00257 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.28■□□□□ 0.52
CBX4O00257 IFNL4P1-201ENST00000607083 540 ntBASIC18.28■□□□□ 0.52
CBX4O00257 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CBX4O00257 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CBX4O00257 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CBX4O00257 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CBX4O00257 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.28■□□□□ 0.52
CBX4O00257 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.28■□□□□ 0.52
CBX4O00257 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CBX4O00257 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 KRT8P10-201ENST00000450021 1447 ntBASIC18.27■□□□□ 0.52
CBX4O00257 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.27■□□□□ 0.52
CBX4O00257 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CBX4O00257 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.27■□□□□ 0.52
CBX4O00257 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.27■□□□□ 0.52
CBX4O00257 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.27■□□□□ 0.52
CBX4O00257 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.27■□□□□ 0.52
CBX4O00257 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.27■□□□□ 0.52
CBX4O00257 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.27■□□□□ 0.52
CBX4O00257 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.27■□□□□ 0.52
CBX4O00257 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CBX4O00257 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.27■□□□□ 0.51
CBX4O00257 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.27■□□□□ 0.51
CBX4O00257 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.27■□□□□ 0.51
CBX4O00257 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CBX4O00257 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.27■□□□□ 0.51
CBX4O00257 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
CBX4O00257 AL354751.1-201ENST00000412768 1863 ntBASIC18.26■□□□□ 0.51
CBX4O00257 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.26■□□□□ 0.51
CBX4O00257 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.26■□□□□ 0.51
CBX4O00257 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.26■□□□□ 0.51
CBX4O00257 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.26■□□□□ 0.51
CBX4O00257 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.26■□□□□ 0.51
CBX4O00257 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CBX4O00257 AC100803.2-201ENST00000562459 1963 ntBASIC18.26■□□□□ 0.51
CBX4O00257 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.26■□□□□ 0.51
CBX4O00257 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms