Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AP000867.4-201ENST00000641616 219 ntBASIC33.82■■■■□ 3.01
SHROOM4Q9ULL8 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3.01
SHROOM4Q9ULL8 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC33.82■■■■□ 3.01
SHROOM4Q9ULL8 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 AC079776.2-201ENST00000641154 1609 ntBASIC33.82■■■■□ 3
SHROOM4Q9ULL8 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC33.82■■■■□ 3
SHROOM4Q9ULL8 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 KRT8P47-201ENST00000604727 1398 ntBASIC33.81■■■■□ 3
SHROOM4Q9ULL8 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC33.81■■■■□ 3
SHROOM4Q9ULL8 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 AC098818.2-201ENST00000564925 2320 ntBASIC33.8■■■■□ 3
SHROOM4Q9ULL8 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 USP49-202ENST00000373010 2446 ntTSL 5 BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 RNF34-208ENST00000555076 593 ntTSL 3 BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC33.8■■■■□ 3
SHROOM4Q9ULL8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
SHROOM4Q9ULL8 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 PRSS29P-201ENST00000440800 595 ntBASIC33.78■■■■□ 3
SHROOM4Q9ULL8 AC136632.2-201ENST00000512891 861 ntBASIC33.78■■■■□ 3
SHROOM4Q9ULL8 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 SP100-208ENST00000427101 1922 ntTSL 2 BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC33.78■■■■□ 3
SHROOM4Q9ULL8 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 WDR53-203ENST00000429115 683 ntTSL 2 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 AP000344.2-201ENST00000512987 629 ntBASIC33.77■■■■□ 3
SHROOM4Q9ULL8 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC33.77■■■■□ 3
SHROOM4Q9ULL8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC33.76■■■■□ 3
SHROOM4Q9ULL8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■□□ 2.99
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms